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Report for CCDS15092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15092.1 Public Mus musculus 1 Serpine2 23 108 98 CCDS HistoryNCBI Gene:20720Re-query CCDS DB by CCDS ID:15092.1Re-query CCDS DB by GeneID:20720See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15092.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027467.10 ENSMUSP00000027467.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027467.10Link to Ensembl Protein Viewer:ENSMUSP00000027467.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027467Re-query CCDS DB by Protein ID:ENSMUSP00000027467
Original member Current member NCBI NM_009255.4 NP_033281.1 Accepted alive Link to Nucleotide Sequence:NM_009255.4Link to Protein Sequence:NP_033281.1Re-query CCDS DB by Nucleotide ID:NM_009255Re-query CCDS DB by Protein ID:NP_033281Link to BLAST:NP_033281.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033281.1 397 Q07235 397 100% 0 0

Chromosomal Locations for CCDS 15092.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 79795005 79795042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 79796826 79796909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 79799468 79799554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 79801456 79801556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 79802847 79803045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 79810554 79810751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 79816728 79816955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 79821277 79821535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGAATTGGCATTTTCCTTTCTTCATCTTGACCACAGTGACTTTATACTCTGTGCACTCCCAGTTCAACT
CTCTGTCACTGGAGGAACTAGGCTCCAACACAGGGATCCAGGTCTTCAATCAGATCATCAAGTCACGGCC
TCATGAGAACGTTGTTGTCTCCCCACATGGGATCGCGTCCATCTTGGGCATGCTGCAGCTCGGGGCTGAC
GGCAAGACAAAGAAGCAGCTCTCCACGGTGATGCGATATAATGTAAACGGAGTTGGTAAAGTGCTGAAGA
AGATCAACAAGGCTATTGTCTCCAAGAAAAATAAAGACATTGTGACCGTGGCCAATGCTGTGTTTCTCAG
GAATGGCTTTAAAATGGAAGTGCCTTTTGCAGTAAGGAACAAAGATGTGTTTCAGTGTGAAGTGCAGAAT
GTGAACTTCCAGGACCCAGCCTCTGCCTCTGAGTCCATCAATTTTTGGGTCAAAAATGAGACCAGGGGCA
TGATTGATAATCTGCTTTCCCCAAATCTGATCGATGGTGCCCTTACCAGGCTGGTCCTCGTTAATGCAGT
GTATTTCAAGGGTTTGTGGAAGTCTCGGTTTCAACCAGAGAGCACAAAGAAACGGACATTCGTGGCAGGT
GATGGGAAATCCTACCAAGTACCCATGTTGGCTCAGCTCTCTGTGTTCCGCTCAGGGTCTACCAGGACCC
CGAATGGCTTATGGTACAACTTCATTGAGCTGCCCTACCATGGTGAGAGCATCAGCATGCTGATCGCCCT
GCCAACAGAGAGCTCCACCCCACTGTCTGCCATCATCCCTCACATCACTACCAAGACCATTGATAGCTGG
ATGAACACCATGGTACCCAAGAGGATGCAGCTGGTCCTACCCAAGTTCACAGCTGTGGCACAAACAGATC
TGAAGGAGCCACTGAAAGCCCTTGGCATTACTGAGATGTTTGAGCCATCAAAGGCAAATTTTACAAAAAT
AACAAGGTCAGAGAGCCTTCATGTCTCTCACATCTTGCAAAAAGCAAAAATTGAAGTCAGTGAAGATGGA
ACCAAAGCTTCGGCAGCAACAACTGCAATCCTAATTGCAAGGTCATCACCTCCCTGGTTTATAGTAGACA
GGCCTTTCCTGTTTTCCATCCGACACAATCCCACAGGTGCCATCTTGTTCCTGGGCCAGGTGAACAAGCC
CTGA

Translation (397 aa):
MNWHFPFFILTTVTLYSVHSQFNSLSLEELGSNTGIQVFNQIIKSRPHENVVVSPHGIASILGMLQLGAD
GKTKKQLSTVMRYNVNGVGKVLKKINKAIVSKKNKDIVTVANAVFLRNGFKMEVPFAVRNKDVFQCEVQN
VNFQDPASASESINFWVKNETRGMIDNLLSPNLIDGALTRLVLVNAVYFKGLWKSRFQPESTKKRTFVAG
DGKSYQVPMLAQLSVFRSGSTRTPNGLWYNFIELPYHGESISMLIALPTESSTPLSAIIPHITTKTIDSW
MNTMVPKRMQLVLPKFTAVAQTDLKEPLKALGITEMFEPSKANFTKITRSESLHVSHILQKAKIEVSEDG
TKASAATTAILIARSSPPWFIVDRPFLFSIRHNPTGAILFLGQVNKP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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