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Report for CCDS14876.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14876.1 Public Mus musculus 1 Arid5a 23 108 98 CCDS HistoryNCBI Gene:214855Re-query CCDS DB by CCDS ID:14876.1Re-query CCDS DB by GeneID:214855See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14876.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000137906.1 ENSMUSP00000117810.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137906.1Link to Ensembl Protein Viewer:ENSMUSP00000117810.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137906Re-query CCDS DB by Protein ID:ENSMUSP00000117810
Original member Current member NCBI NM_145996.4 NP_666108.2 Accepted alive Link to Nucleotide Sequence:NM_145996.4Link to Protein Sequence:NP_666108.2Re-query CCDS DB by Nucleotide ID:NM_145996Re-query CCDS DB by Protein ID:NP_666108Link to BLAST:NP_666108.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666108.2 532 Q3U108-4 532 100% 0 0

Chromosomal Locations for CCDS 14876.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36307833 36307836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36316209 36316327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36318084 36318181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36318488 36318653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36318992 36320203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGGCAGCACCTCCGGCCAAAGGGAACACAGAGCAGTCAGAAGAAGGTGACCTCCCGCAGCTTCCTGTAT
CCCCCAAGCCAGATGATGAGCAGAGCAGGAGCCAGAGCCCCACCCAGCTCCAGGTGACAGGCCGCCGCCT
CTGGAAGAACGTGTATGATGAACTTGGCGGTAGCCCAGGCAGCACCAGTGCGGCCACATGCACACGCCGC
CACTATGAGAGGCTGGTCCTCCCATATGTGCGGCATCTGAAGGGGGAGGACGACAAGCCACTGCCTCCTA
CCAAGCCCAGGAAGCAATACAAGATGGCCAAGGAGCTGAGGGGAGACGATGGGACCACTGAGAAGCTGAA
GAAGGCCAAGGACTCAGAGGAGAGGCGGGTGGAGCAGACCACGCCAGGAAAGACCAAATCAGATGCCACT
GGCCAGACACAGCTTCCCTGCCAGGGATCCTCGAGGGACAGCACAGAACAGCTGGGCCCAGTATCTGGAC
CCTCTCCACCACTCACGGGTGCTAGTAGCTGCCCTGAGGCCTACAAGCGGCTCTTGTCAAGCTTTTACTG
CAAAGGGGCGCATGGCATCATGTCACCACTGGCCAAAAAGAAACTCCTGGCCCAGGTCAGCAAGGCAGAG
GCCTTGCAGTGCCAAGAAGAGGGCTGTCGCCATGGAGCAAGGAGCCCCAACAAGGACATTCAAGACAGTC
CCCAGAACCTAAGAGGGCCGGCTGAGAACTCTGAACACCAGCTAACCCCCCGGGAAGGATTGCAGGCCCC
TGGTGGGAGCACCAGGATGGAGGCCCAAGTGGGCCCCTGCCCTACAGCCCCCATGTTCTCAGGCTGTTTT
CATGCGTACCCCACCGAGGTGCTGAAACCTGTCAGCCAGCACCCTAGGGACTTCTTCTCCGGCCTTAAAG
ACAGGGTGCTGTTGGGACCACCTGGTAAAGAAGAAGGTCCGACAACCAAAGAGTCCCATCTGGTGTGGGG
TGGGGATGCCAACCACCCCTCTGCATTCCATAAAGGCAGCACAAGAAAAAGAAGTTTCTACCCCAAACCC
AAAGCCTGCTGGGTGTCTCCCATGGCCAAGGTCCCTACTGAGAGGCCTGGAGCCCCATCCCCTCATCCCA
GTAGCCCAGGTCTTGGCAGTAAGCGCGGCTTGGAAGAAGAGGGATTCGCTCATGGTGGCAAGAAACTGAG
GGCAGTGTCTCCCTTTCTGAAGGAGGTGGATTCCAAGGAGACTGGGGGCAAGCCTGCAGCCCCTGGCTTG
GCTGTATCCTGTCTACTGGGCCCAACCCCGGGGCCCACTCCTCCAGAGGCCTACAGGGGCACCATGCTGC
GGTGTCCTCTAAACTTCACCGGTAGCGCAGACCCTCTGAAGGGCCAGGCCTCACTCCCCTTCAGCCCCCT
GGTCATCCCTGCTTTCCCAGCCCACCTTCTGGCTACAACAGGCTCCTCACCTATGGCTGCCAGCCTGATG
CATTTCCCTCCCACGCCCTATGACGCTGTCCTACGCAACAGACTGGGTCCAGCTTCGTCTGCCTGGCACA
TGCCACCCGTCACAACCTATGCGGCACCTCACTTCTTCCACCTCAACACCAAACTGTAG

Translation (532 aa):
MAAPPAKGNTEQSEEGDLPQLPVSPKPDDEQSRSQSPTQLQVTGRRLWKNVYDELGGSPGSTSAATCTRR
HYERLVLPYVRHLKGEDDKPLPPTKPRKQYKMAKELRGDDGTTEKLKKAKDSEERRVEQTTPGKTKSDAT
GQTQLPCQGSSRDSTEQLGPVSGPSPPLTGASSCPEAYKRLLSSFYCKGAHGIMSPLAKKKLLAQVSKAE
ALQCQEEGCRHGARSPNKDIQDSPQNLRGPAENSEHQLTPREGLQAPGGSTRMEAQVGPCPTAPMFSGCF
HAYPTEVLKPVSQHPRDFFSGLKDRVLLGPPGKEEGPTTKESHLVWGGDANHPSAFHKGSTRKRSFYPKP
KACWVSPMAKVPTERPGAPSPHPSSPGLGSKRGLEEEGFAHGGKKLRAVSPFLKEVDSKETGGKPAAPGL
AVSCLLGPTPGPTPPEAYRGTMLRCPLNFTGSADPLKGQASLPFSPLVIPAFPAHLLATTGSSPMAASLM
HFPPTPYDAVLRNRLGPASSAWHMPPVTTYAAPHFFHLNTKL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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