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Report for CCDS12429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12429.1 Public Homo sapiens 19 WDR88 24 110 108 CCDS HistoryNCBI Gene:126248Re-query CCDS DB by CCDS ID:12429.1Re-query CCDS DB by GeneID:126248See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12429.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355868.4 ENSP00000348129.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355868.4Link to Ensembl Protein Viewer:ENSP00000348129.2Re-query CCDS DB by Nucleotide ID:ENST00000355868Re-query CCDS DB by Protein ID:ENSP00000348129
Original member Current member NCBI NM_173479.4 NP_775750.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173479.4Link to Protein Sequence:NP_775750.3Re-query CCDS DB by Nucleotide ID:NM_173479Re-query CCDS DB by Protein ID:NP_775750Link to BLAST:NP_775750.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775750.3 472 Q6ZMY6-1 472 100% 0 0

Chromosomal Locations for CCDS 12429.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 33132170 33132445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33137677 33137787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33144844 33144932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33147645 33147708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33148772 33148910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33151181 33151310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33156355 33156542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33160414 33160496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33164197 33164265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33172348 33172440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 33175396 33175572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGGCCTCCCCGCCGCGGTGCTCCCCGACAGCCCATGACAGGGAATGCAAGTTGCCGCCACCCTCCGCCC
CCGCCAGCGAGTATTGTCCCGGCAAGCTGTCCTGGGGGACCATGGCGAGGGCCTTAGGCCGCTTCAAGCT
GTCGATCCCGCACACGCACCTGCTGGCCACCCTCGACCCCCTGGCCTTGGACAGGGAACCACCACCGCAT
CTGTTGCCTGAGAAGCACCAGGTGCCGGAGAAATTGATCTGGGGCGACCAGGACCCTCTCTCCAAGATCC
CATTTAAAATTCTGAGTGGGCACGAGCACGCTGTGAGCACCTGCCACTTCTGTGTGGATGACACAAAGCT
CCTCAGTGGCTCCTATGACTGCACTGTGAAGCTGTGGGATCCGGTGGACGGTTCTGTGGTTCGCGATTTT
GAGCACAGGCCCAAAGCTCCTGTTGTAGAGTGCAGCATCACCGGCGACAGCAGCAGAGTCATTGCCGCAT
CCTATGATAAGACAGTGAGGGCCTGGGACCTGGAGACAGGCAAGCTGCTGTGGAAGGTCAGGTATGATAC
CTTCATCGTCTCCTGTAAGTTTTCTCCTGATGGTAAATACGTGGTCTCAGGCTTCGACGTGGATCATGGA
ATCTGCATAATGGACGCCGAGAACATCACCACCGTTTCCGTCATCAAAGATCATCACACAAGGTCCATCA
CGTCATGCTGCTTTGACCCCGACAGCCAGAGGGTGGCTTCTGTCTCATTGGACAGGTGCATCAAGATCTG
GGATGTTACATCCCAGGCCACGCTGCTCACCATCACTAAGGCACATTCCAATGCAATCTCAAACTGCTGT
TTTACCTTCAGTGGCCATTTCCTGTGTACAAGCTCCTGGGATAAAAACTTAAAAATATGGAACGTCCACA
CAGGGGAGTTTCGAAACTGTGGAGCCTGTGTGACTCTGATGCAGGGCCATGAAGGTTCTGTCAGTTCCTG
TCACTTTGCCAGAGACAGCTCTTTTCTCATTTCTGGAGGGTTTGATAGGACTGTGGCTATTTGGGATGTA
GCAGAAGGCTACCGGAAGCTCTCTTTGAAGGGCCATAATGACTGGGTGATGGATGTTGCCATTAGCAACA
ACAAGAAATGGATCCTGTCTGCTTCCAAGGATAGGACCATGAGACTGTGGAATATTGAAGAAATTGATGA
AATTCCTTTGGTAATCAAGTACAAAAAGGCCGTGGGCTTAAAGTTGAAACAGTGCGAAAGATGTGACAGG
CCTTTCTCCATCTTCAAGAGTGACACCTCTTCTGAAATGTTCACCCAATGCGTGTTCTGCCGGATAGATA
CAAGGGGCTTGCCAGCAGATACTTCATCGTCATCATCATCATCGGAAAGGGAGAACTCACCGCCGCCAAG
GGGAAGCAAGGATGACTGA

Translation (472 aa):
MASPPRCSPTAHDRECKLPPPSAPASEYCPGKLSWGTMARALGRFKLSIPHTHLLATLDPLALDREPPPH
LLPEKHQVPEKLIWGDQDPLSKIPFKILSGHEHAVSTCHFCVDDTKLLSGSYDCTVKLWDPVDGSVVRDF
EHRPKAPVVECSITGDSSRVIAASYDKTVRAWDLETGKLLWKVRYDTFIVSCKFSPDGKYVVSGFDVDHG
ICIMDAENITTVSVIKDHHTRSITSCCFDPDSQRVASVSLDRCIKIWDVTSQATLLTITKAHSNAISNCC
FTFSGHFLCTSSWDKNLKIWNVHTGEFRNCGACVTLMQGHEGSVSSCHFARDSSFLISGGFDRTVAIWDV
AEGYRKLSLKGHNDWVMDVAISNNKKWILSASKDRTMRLWNIEEIDEIPLVIKYKKAVGLKLKQCERCDR
PFSIFKSDTSSEMFTQCVFCRIDTRGLPADTSSSSSSSERENSPPPRGSKDD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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