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Report for CCDS12107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12107.1 Public Homo sapiens 19 NFIC 24 110 108 CCDS HistoryNCBI Gene:4782Re-query CCDS DB by CCDS ID:12107.1Re-query CCDS DB by GeneID:4782See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12107.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000341919.7 ENSP00000342194.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341919.7Link to Ensembl Protein Viewer:ENSP00000342194.2Re-query CCDS DB by Nucleotide ID:ENST00000341919Re-query CCDS DB by Protein ID:ENSP00000342194
Original member Current member NCBI NM_005597.4 NP_005588.2 Accepted alive Link to Nucleotide Sequence:NM_005597.4Link to Protein Sequence:NP_005588.2Re-query CCDS DB by Nucleotide ID:NM_005597Re-query CCDS DB by Protein ID:NP_005588Link to BLAST:NP_005588.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005588.2 428 P08651-5 428 100% 0 0

Chromosomal Locations for CCDS 12107.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3366637 3366666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3381712 3382243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3425106 3425177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3433518 3433592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3434277 3434400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3435083 3435207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3449014 3449139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3452482 3452666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3462752 3462769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGTATTCGTCCCCGCTCTGCCTCACCCAGGATGAGTTCCACCCGTTCATCGAGGCCCTGCTGCCTCACG
TC
CGCGCCTTCGCCTACACCTGGTTCAACCTGCAGGCGCGGAAGCGCAAGTACTTCAAGAAGCACGAGAA
G
CGGATGTCGAAGGACGAGGAGCGTGCGGTCAAGGACGAGCTGCTGGGCGAGAAGCCCGAGGTCAAGCAG
AAG
TGGGCGTCGCGGCTGCTGGCCAAGCTGCGCAAGGACATCCGGCCCGAGTGCCGCGAGGACTTCGTGC
TG
AGCATCACCGGCAAGAAGGCGCCGGGCTGCGTGCTCTCCAACCCCGACCAGAAGGGCAAGATGCGGCG
C
ATCGACTGTCTCCGGCAGGCGGACAAGGTGTGGCGGCTGGACCTGGTCATGGTCATCCTGTTCAAGGGC
ATC
CCGCTGGAGAGCACCGACGGCGAGCGCCTGGTCAAGGCTGCGCAGTGCGGTCACCCGGTCCTGTGCG
TG
CAGCCGCACCACATTGGCGTGGCCGTCAAGGAGCTGGACCTCTACCTGGCCTACTTCGTGCGTGAGCG
A
GATGCAGAGCAAAGCGGCAGTCCCCGGACAGGGATGGGCTCTGACCAGGAGGACAGCAAGCCCATCACG
CTG
GACACGACCGACTTCCAGGAGAGCTTTGTCACCTCCGGCGTGTTCAGCGTCACTGAGCTCATCCAAG
TG
TCCCGGACACCCGTGGTGACTGGAACAGGACCCAACTTCTCCCTGGGGGAGCTGCAGGGGCACCTGGC
A
TACGACCTGAACCCAGCCAGCACTGGCCTCAGAAGAACGCTGCCCAGCACCTCCTCCAGTGGGAGCAAG
CGG
CACAAATCGGGCTCGATGGAGGAAGACGTGGACACGAGCCCTGGCGGCGATTACTACACTTCGCCCA
GC
TCGCCCACGAGTAGCAGCCGCAACTGGACGGAGGACATGGAAGGAGGCATCTCGTCCCCGGTGAAGAA
G
ACAGAGATGGACAAGTCACCATTCAACAGCCCGTCCCCCCAGGACTCTCCCCGCCTCTCCAGCTTCACC
CAG
CACCACCGGCCCGTCATCGCCGTGCACAGCGGGATCGCCCGGAGCCCACACCCGTCCTCCGCTCTGC
AT
TTCCCTACGACGTCCATCCTACCCCAGACGGCCTCCACCTACTTCCCCCACACGGCCATCCGCTACCC
A
CCTCATCTCAACCCCCAGGACCCGCTCAAAGATCTTGTCTCGCTGGCCTGCGACCCAGCCAGCCAGCAA
CCT
GGACCGTCCTGGTATCTGGGATAG


Translation (428 aa):
MYSSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQ
K
WASRLLAKLRKDIRPECREDFVLSITGKKAPGCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKG
I
PLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRER
DAEQSGSPRTGMGSDQEDSKPIT
L
DTTDFQESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQGHLAYDLNPASTGLRRTLPSTSSSGSK
R
HKSGSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDMEG
GISSPVKKTEMDKSPFNSPSPQDSPRLSSFT
Q
HHRPVIAVHS
GIARSPHPSSALHFPTTSILPQTASTYFPHTAIRYPPHLNPQDPLKDLVSLACDPASQQ
P
GP
SWYLG



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 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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