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Report for CCDS11440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11440.1 Public Homo sapiens 17 CNTD1 24 110 108 CCDS HistoryNCBI Gene:124817Re-query CCDS DB by CCDS ID:11440.1Re-query CCDS DB by GeneID:124817See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11440.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000588408.6 ENSP00000465204.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000588408.6Link to Ensembl Protein Viewer:ENSP00000465204.1Re-query CCDS DB by Nucleotide ID:ENST00000588408Re-query CCDS DB by Protein ID:ENSP00000465204
Original member Current member NCBI NM_173478.3 NP_775749.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173478.3Link to Protein Sequence:NP_775749.2Re-query CCDS DB by Nucleotide ID:NM_173478Re-query CCDS DB by Protein ID:NP_775749Link to BLAST:NP_775749.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775749.2 330 Q8N815-1 330 100% 0 0

Chromosomal Locations for CCDS 11440.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 42799068 42799236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42803620 42803695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42804225 42804396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42805722 42805884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42806674 42806818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42807768 42807864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42809365 42809535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGGACGGACCCATGAGGCCACGATCGGCCTCCCTCGTTGACTTTCAGTTTGGAGTTGTCGCCACAGAGA
CGATTGAAGACGCCCTGCTTCACTTGGCCCAGCAGAATGAGCAAGCAGTGAGGGAGGCTTCGGGGCGGCT
GGGCCGCTTCAGGGAGCCCCAGATCGTGGAGTTTGTTTTTCTCCTGTCTGAACAATGGTGTCTGGAGAAA
TCTGTGAGCTACCAGGCTGTAGAAATCCTAGAAAGGTTTATGGTAAAACAGGCAGAGAACATCTGCAGGC
AAGCCACAATCCAGCCAAGAGATAATAAGAGAGAGTCTCAGAATTGGAGGGCTCTGAAACAGCAGCTTGT
CAACAAGTTTACTCTCCGTCTTGTGTCATGTGTTCAGCTGGCCAGCAAACTTTCCTTCCGAAACAAAATA
ATCAGCAACATTACAGTCTTGAATTTCCTCCAGGCTCTAGGCTATCTACACACTAAAGAAGAACTGCTGG
AATCAGAGCTTGATGTTTTGAAGTCCTTGAACTTCCGAATTAATCTGCCCACTCCCCTGGCATATGTGGA
GACGCTCCTAGAGGTTTTAGGATACAATGGCTGTTTGGTTCCAGCCATGAGGCTGCATGCAACCTGCCTG
ACACTGCTCGACCTGGTCTATCTTCTGCATGAACCCATATATGAGAGCCTGTTGAGGGCTTCAATTGAGA
ACTCCACTCCCAGTCAGCTGCAAGGGGAAAAGTTTACTTCAGTGAAGGAAGACTTCATGCTGTTGGCAGT
AGGAATCATTGCAGCAAGTGCTTTCATCCAAAACCATGAGTGTTGGAGCCAGGTTGTGGGGCATTTGCAG
AGCATCACTGGTATTGCCTTGGCAAGCATTGCTGAGTTCTCTTATGCAATCCTGACTCACGGAGTGGGAG
CCAACACTCCGGGGAGACAGCAGTCTATTCCTCCCCACCTGGCAGCCAGAGCTCTGAAGACTGTTGCTTC
CTCTAACACATGA

Translation (330 aa):
MDGPMRPRSASLVDFQFGVVATETIEDALLHLAQQNEQAVREASGRLGRFREPQIVEFVFLLSEQWCLEK
SVSYQAVEILERFMVKQAENICRQATIQPRDNKRESQNWRALKQQLVNKFTLRLVSCVQLASKLSFRNKI
ISNITVLNFLQALGYLHTKEELLESELDVLKSLNFRINLPTPLAYVETLLEVLGYNGCLVPAMRLHATCL
TLLDLVYLLHEPIYESLLRASIENSTPSQLQGEKFTSVKEDFMLLAVGIIAASAFIQNHECWSQVVGHLQ
SITGIALASIAEFSYAILTHGVGANTPGRQQSIPPHLAARALKTVASSNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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