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Report for CCDS9870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9870.1 Public Homo sapiens 14 NRXN3 24 110 108 CCDS HistoryNCBI Gene:9369Re-query CCDS DB by CCDS ID:9870.1Re-query CCDS DB by GeneID:9369See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9870.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000554719.5 ENSP00000451648.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000554719.5Link to Ensembl Protein Viewer:ENSP00000451648.1Re-query CCDS DB by Nucleotide ID:ENST00000554719Re-query CCDS DB by Protein ID:ENSP00000451648
Original member Current member NCBI NM_004796.6 NP_004787.2 Accepted alive Link to Nucleotide Sequence:NM_004796.6Link to Protein Sequence:NP_004787.2Re-query CCDS DB by Nucleotide ID:NM_004796Re-query CCDS DB by Protein ID:NP_004787Link to BLAST:NP_004787.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004787.2 1061 Q9Y4C0-3 1061 100% 0 0

Chromosomal Locations for CCDS 9870.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 78651225 78651326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 78709217 78709655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 78714756 78715139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 78803620 78803823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 78810318 78810344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 78957242 78957361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 78966025 78966406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 78967208 78967398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 78968173 78968346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 78988022 78988141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79467221 79467402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79663778 79663949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79697630 79697937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79805112 79805190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79861663 79861964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3186 nt):
ATGCTGGGCTCGGACGACTTCTTCTATGTAGGAGGAAGCCCAAGTACCGCTGACTTGCCTGGCTCCCCTG
TCAGCAACAACTTCATGGGCTGCCTTAAAGAGGTTGTTTATAAGAATAATGACATCCGTCTGGAGCTGTC
TCGCCTGGCCCGGATTGCGGACACCAAGATGAAAATCTATGGCGAAGTTGTGTTTAAGTGTGAGAATGTG
GCCACACTGGACCCCATCAACTTTGAGACCCCAGAGGCTTACATCAGCTTGCCCAAGTGGAACACTAAAC
GTATGGGCTCCATCTCCTTTGACTTCCGCACCACAGAGCCCAATGGCCTGATCCTCTTCACTCATGGAAA
GCCCCAAGAGAGGAAGGATGCTCGGAGCCAGAAGAATACAAAAGTAGACTTCTTTGCCGTGGAACTCCTC
GATGGCAACCTGTACTTGCTGCTTGACATGGGCTCTGGCACCATCAAAGTGAAAGCCACTCAGAAGAAAG
CCAATGATGGGGAATGGTACCATGTGGACATTCAGCGAGATGGCAGATCAGGTACTATATCAGTGAACAG
CAGGCGCACGCCATTCACCGCCAGTGGGGAGAGCGAGATCCTGGACCTGGAAGGAGACATGTACCTGGGA
GGGCTGCCGGAGAACCGTGCTGGCCTTATTCTCCCCACCGAGCTGTGGACTGCCATGCTCAACTATGGCT
ACGTGGGCTGCATCCGCGACCTATTCATTGATGGGCGCAGCAAGAACATTCGACAGCTGGCAGAGATGCA
GAATGCTGCGGGTGTCAAGTCCTCCTGTTCACGGATGAGTGCCAAGCAGTGTGACAGCTACCCCTGCAAG
AATAATGCTGTGTGCAAGGACGGCTGGAACCGCTTCATCTGCGACTGCACCGGCACCGGATACTGGGGAA
GAACCTGCGAAAGGGAGGCATCCATCCTGAGCTATGATGGTAGCATGTACATGAAGATCATCATGCCCAT
GGTCATGCATACTGAGGCAGAGGATGTGTCCTTCCGCTTCATGTCCCAGCGAGCTTATGGGCTGCTGGTG
GCTACGACCTCCAGGGACTCTGCCGACACCCTGCGTCTGGAGCTGGATGGGGGGCGTGTCAAGCTCATGG
TTAACTTAGACTGTATCAGGATAAACTGTAACTCCAGCAAAGGACCAGAGACCTTGTATGCAGGGCAGAA
GCTCAATGACAACGAGTGGCACACCGTTCGGGTGGTGCGGAGAGGAAAAAGCCTTAAGTTAACCGTGGAT
GATGATGTGGCTGAGGGTACAATGGTGGGAGACCATACCCGTTTGGAGTTCCACAACATTGAAACGGGAA
TCATGACTGAGAAACGCTACATCTCCGTTGTCCCCTCCAGCTTTATTGGCCATCTGCAGAGCCTCATGTT
TAATGGCCTTCTCTACATTGACTTGTGCAAAAATGGTGACATTGATTATTGTGAGCTGAAGGCTCGTTTT
GGACTGAGGAACATCATCGCTGACCCTGTCACCTTTAAGACCAAGAGCAGCTACCTGAGCCTTGCCACTC
TTCAGGCTTACACCTCCATGCACCTCTTCTTCCAGTTCAAGACCACCTCACCAGATGGCTTCATTCTCTT
CAATAGTGGTGATGGCAATGACTTCATTGCAGTCGAGCTTGTCAAGGGGTATATACACTACGTTTTTGAC
CTCGGAAACGGTCCCAATGTGATCAAAGGCAACAGTGACCGCCCCCTGAATGACAACCAGTGGCACAATG
TCGTCATCACTCGGGACAATAGTAACACTCATAGCCTGAAAGTGGACACCAAAGTGGTCACTCAGGTTAT
CAATGGTGCCAAAAATCTGGATTTGAAAGGTGATCTCTATATGGCTGGTCTGGCCCAAGGCATGTACAGC
AACCTCCCAAAGCTCGTGGCCTCTCGAGATGGCTTTCAGGGCTGTCTAGCATCAGTGGACTTGAATGGAC
GCCTGCCAGACCTCATCAATGATGCTCTTCATCGGAGCGGACAGATCGAGCGTGGCTGTGAAGGACCCAG
TACCACCTGCCAGGAAGATTCATGTGCCAACCAGGGGGTCTGCATGCAACAATGGGAGGGCTTCACCTGT
GATTGTTCTATGACCTCTTATTCTGGAAACCAGTGCAATGATCCTGGCGCTACGTACATCTTTGGGAAAA
GTGGTGGGCTTATCCTCTACACCTGGCCAGCCAATGACAGGCCCAGCACGCGGTCTGACCGCCTTGCCGT
GGGCTTCAGCACCACTGTGAAGGATGGCATCTTGGTCCGCATCGACAGTGCTCCAGGACTTGGTGACTTC
CTCCAGCTTCACATAGAACAGGGGAAAATTGGAGTTGTCTTCAACATTGGCACAGTTGACATCTCCATCA
AAGAGGAGAGAACCCCTGTAAATGACGGCAAATACCATGTGGTACGCTTCACCAGGAACGGCGGCAACGC
CACCCTGCAGGTGGACAACTGGCCAGTGAATGAACATTATCCTACAGGCCGGCAGTTAACCATCTTCAAC
ACTCAGGCGCAAATAGCCATTGGTGGAAAGGACAAAGGACGCCTCTTCCAAGGCCAACTCTCTGGGCTCT
ATTATGATGGTTTGAAAGTACTGAACATGGCGGCTGAGAACAACCCCAATATTAAAATCAATGGAAGTGT
TCGGCTGGTTGGAGAAGTCCCATCAATTTTGGGAACAACACAGACGACCTCCATGCCACCAGAAATGTCT
ACTACTGTCATGGAAACCACTACTACAATGGCGACTACCACAACCCGTAAGAATCGCTCTACAGCCAGCA
TTCAGCCAACATCAGATGATCTTGTTTCATCTGCTGAATGTTCAAGTGATGATGAAGACTTTGTTGAATG
TGAGCCGAGTACAGCAAACCCCACGGAGCCGGGAATCAGACGGGTTCCGGGGGCCTCAGAGGTGATCCGG
GAGTCGAGCAGCACAACAGGGATGGTCGTCGGCATTGTGGCTGCTGCCGCCCTCTGCATCTTGATCCTCC
TGTACGCCATGTACAAGTACAGGAACAGGGACGAGGGGTCCTATCAAGTGGACGAGACGCGGAACTACAT
CAGCAACTCCGCCCAGAGCAACGGCACGCTCATGAAGGAGAAGCAGCAGAGCTCGAAGAGCGGCCACAAG
AAACAGAAAAACAAGGACAGGGAGTATTACGTGTAA

Translation (1061 aa):
MLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDIRLELSRLARIADTKMKIYGEVVFKCENV
ATLDPINFETPEAYISLPKWNTKRMGSISFDFRTTEPNGLILFTHGKPQERKDARSQKNTKVDFFAVELL
DGNLYLLLDMGSGTIKVKATQKKANDGEWYHVDIQRDGRSGTISVNSRRTPFTASGESEILDLEGDMYLG
GLPENRAGLILPTELWTAMLNYGYVGCIRDLFIDGRSKNIRQLAEMQNAAGVKSSCSRMSAKQCDSYPCK
NNAVCKDGWNRFICDCTGTGYWGRTCEREASILSYDGSMYMKIIMPMVMHTEAEDVSFRFMSQRAYGLLV
ATTSRDSADTLRLELDGGRVKLMVNLDCIRINCNSSKGPETLYAGQKLNDNEWHTVRVVRRGKSLKLTVD
DDVAEGTMVGDHTRLEFHNIETGIMTEKRYISVVPSSFIGHLQSLMFNGLLYIDLCKNGDIDYCELKARF
GLRNIIADPVTFKTKSSYLSLATLQAYTSMHLFFQFKTTSPDGFILFNSGDGNDFIAVELVKGYIHYVFD
LGNGPNVIKGNSDRPLNDNQWHNVVITRDNSNTHSLKVDTKVVTQVINGAKNLDLKGDLYMAGLAQGMYS
NLPKLVASRDGFQGCLASVDLNGRLPDLINDALHRSGQIERGCEGPSTTCQEDSCANQGVCMQQWEGFTC
DCSMTSYSGNQCNDPGATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTTVKDGILVRIDSAPGLGDF
LQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRFTRNGGNATLQVDNWPVNEHYPTGRQLTIFN
TQAQIAIGGKDKGRLFQGQLSGLYYDGLKVLNMAAENNPNIKINGSVRLVGEVPSILGTTQTTSMPPEMS
TTVMETTTTMATTTTRKNRSTASIQPTSDDLVSSAECSSDDEDFVECEPSTANPTEPGIRRVPGASEVIR
ESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETRNYISNSAQSNGTLMKEKQQSSKSGHK
KQKNKDREYYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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