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Report for CCDS879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
879.1 Public Homo sapiens 1 SYCP1 24 110 108 CCDS HistoryNCBI Gene:6847Re-query CCDS DB by CCDS ID:879.1Re-query CCDS DB by GeneID:6847See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 879.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369518.1 ENSP00000358531.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369518.1Link to Ensembl Protein Viewer:ENSP00000358531.1Re-query CCDS DB by Nucleotide ID:ENST00000369518Re-query CCDS DB by Protein ID:ENSP00000358531
Original member Current member EBI ENST00000369522.8 ENSP00000358535.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369522.8Link to Ensembl Protein Viewer:ENSP00000358535.3Re-query CCDS DB by Nucleotide ID:ENST00000369522Re-query CCDS DB by Protein ID:ENSP00000358535
Original member Current member EBI ENST00000618516.4 ENSP00000480997.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618516.4Link to Ensembl Protein Viewer:ENSP00000480997.1Re-query CCDS DB by Nucleotide ID:ENST00000618516Re-query CCDS DB by Protein ID:ENSP00000480997
Original member Current member NCBI NM_001282541.2 NP_001269470.1 Accepted alive Link to Nucleotide Sequence:NM_001282541.2Link to Protein Sequence:NP_001269470.1Re-query CCDS DB by Nucleotide ID:NM_001282541Re-query CCDS DB by Protein ID:NP_001269470Link to BLAST:NP_001269470.1
Original member Current member NCBI NM_003176.4 NP_003167.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003176.4Link to Protein Sequence:NP_003167.2Re-query CCDS DB by Nucleotide ID:NM_003176Re-query CCDS DB by Protein ID:NP_003167Link to BLAST:NP_003167.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269470.1 976 Q15431 976 100% 0 0
NP_003167.2 976 Q15431 976 100% 0 0

Chromosomal Locations for CCDS 879.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 114855465 114855572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114856573 114856657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114857232 114857275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114857444 114857497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114858547 114858711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114859743 114859810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114860736 114860809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114874506 114874564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114876069 114876138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114876737 114876810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114878094 114878202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114885535 114885629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114886125 114886309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114887626 114887693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114895448 114895509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114910397 114910501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114911479 114911582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114913033 114913150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114913975 114914045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114923449 114923530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114926278 114926340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114926501 114926563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114944339 114944455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114944872 114944982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114946289 114946381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114947246 114947320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114977557 114977616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114981336 114981512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114984725 114984868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114994698 114994787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 114994882 114995019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2931 nt):
ATGGAAAAGCAAAAGCCCTTTGCATTGTTCGTACCACCGAGATCAAGCAGCAGTCAGGTGTCTGCGGTGA
AACCTCAGACCCTGGGAGGCGATTCCACTTTCTTCAAGAGTTTCAACAAATGTACTGAAGATGATTTTGA
GTTTCCATTTGCAAAGACTAATCTCTCCAAAAATGGGGAAAACATTGATTCAGATCCTGCTTTACAAAAA
GTTAATTTCTTGCCCGTGCTTGAGCAGGTTGGTAATTCTGACTGTCACTATCAGGAAGGACTAAAAGACT
CTGATTTGGAGAATTCAGAGGGATTGAGCAGAGTGTATTCAAAACTGTATAAGGAGGCTGAAAAGATAAA
AAAATGGAAAGTAAGTACAGAAGCTGAACTGAGACAGAAAGAAAGTAAGTTGCAAGAAAACAGAAAGATA
ATTGAAGCACAGCGAAAAGCCATTCAGGAACTGCAATTTGGAAATGAAAAAGTAAGTTTGAAATTAGAAG
AAGGAATACAAGAAAATAAAGATTTAATAAAAGAGAATAATGCCACAAGGCATTTATGTAATCTACTCAA
AGAAACCTGTGCTAGATCTGCAGAAAAGACAAAGAAATATGAATATGAACGGGAAGAAACCAGGCAAGTT
TATATGGATCTAAATAATAACATTGAGAAAATGATAACAGCTTTTGAGGAACTTCGTGTGCAAGCTGAGA
ATTCCAGACTGGAAATGCATTTTAAGTTAAAGGAAGATTATGAAAAAATCCAACACCTTGAACAAGAATA
CAAGAAGGAAATAAATGACAAGGAAAAGCAGGTATCACTACTATTGATCCAAATCACTGAGAAAGAAAAT
AAAATGAAAGATTTAACATTTCTGCTAGAGGAATCCAGAGATAAAGTTAATCAATTAGAGGAAAAGACAA
AATTACAGAGTGAAAACTTAAAACAATCAATTGAGAAACAGCATCATTTGACTAAAGAACTAGAAGATAT
TAAAGTGTCATTACAAAGAAGTGTGAGTACTCAAAAGGCTTTAGAGGAAGATTTACAGATAGCAACAAAA
ACAATTTGTCAGCTAACTGAAGAAAAAGAAACTCAAATGGAAGAATCTAATAAAGCTAGAGCTGCTCATT
CGTTTGTGGTTACTGAATTTGAAACTACTGTCTGCAGCTTGGAAGAATTATTGAGAACAGAACAGCAAAG
ATTGGAAAAAAATGAAGATCAATTGAAAATACTTACCATGGAGCTTCAAAAGAAATCAAGTGAGCTGGAA
GAGATGACTAAGCTTACAAATAACAAAGAAGTAGAACTTGAAGAATTGAAAAAAGTCTTGGGAGAAAAGG
AAACACTTTTATATGAAAATAAACAATTTGAGAAGATTGCTGAAGAATTAAAAGGAACAGAACAAGAACT
AATTGGTCTTCTCCAAGCCAGAGAGAAAGAAGTACATGATTTGGAAATACAGTTAACTGCCATTACCACA
AGTGAACAGTATTATTCAAAAGAGGTTAAAGATCTAAAAACTGAGCTTGAAAACGAGAAGCTTAAGAATA
CTGAATTAACTTCACACTGCAACAAGCTTTCACTAGAAAACAAAGAGCTCACACAGGAAACAAGTGATAT
GACCCTAGAACTCAAGAATCAGCAAGAAGATATTAATAATAACAAAAAGCAAGAAGAAAGGATGTTGAAA
CAAATAGAAAATCTTCAAGAAACAGAAACCCAATTAAGAAATGAACTAGAATATGTGAGAGAAGAGCTAA
AACAGAAAAGAGATGAAGTTAAATGTAAATTGGACAAGAGTGAAGAAAATTGTAACAATTTAAGGAAACA
AGTTGAAAATAAAAACAAGTATATTGAAGAACTTCAGCAGGAGAATAAGGCCTTGAAAAAAAAAGGTACA
GCAGAAAGCAAGCAACTGAATGTTTATGAGATAAAGGTCAATAAATTAGAGTTAGAACTAGAAAGTGCCA
AACAGAAATTTGGAGAAATCACAGACACCTATCAGAAAGAAATTGAGGACAAAAAGATATCAGAAGAAAA
TCTTTTGGAAGAGGTTGAGAAAGCAAAAGTAATAGCTGATGAAGCAGTAAAATTACAGAAAGAAATTGAT
AAGCGATGTCAACATAAAATAGCTGAAATGGTAGCACTTATGGAAAAACATAAGCACCAATATGATAAGA
TCATTGAAGAAAGAGACTCAGAATTAGGACTTTATAAGAGCAAAGAACAAGAACAGTCATCACTGAGAGC
ATCTTTGGAGATTGAACTATCCAATCTCAAAGCTGAACTTTTGTCTGTTAAGAAGCAACTTGAAATAGAA
AGAGAAGAGAAGGAAAAACTCAAAAGAGAGGCAAAAGAAAACACAGCTACTCTTAAAGAAAAAAAAGACA
AGAAAACACAAACATTTTTATTGGAAACACCTGAAATTTATTGGAAATTGGATTCTAAAGCAGTTCCTTC
ACAAACTGTATCTCGAAATTTCACATCAGTTGATCATGGCATATCCAAAGATAAAAGAGACTATCTGTGG
ACATCTGCCAAAAATACTTTATCTACACCATTGCCAAAGGCATATACAGTGAAGACACCAACAAAACCAA
AACTACAGCAAAGAGAAAACTTGAATATACCCATTGAAGAAAGTAAAAAAAAGAGAAAAATGGCCTTTGA
ATTTGATATTAATTCAGATAGTTCAGAAACTACTGATCTTTTGAGCATGGTTTCAGAAGAAGAGACATTG
AAAACACTGTATAGGAACAATAATCCACCAGCTTCTCATCTTTGTGTCAAAACACCAAAAAAGGCCCCTT
CATCTCTAACAACCCCTGGATCTACACTGAAGTTTGGAGCTATAAGAAAAATGCGGGAGGACCGTTGGGC
TGTAATTGCTAAAATGGATAGAAAAAAAAAACTAAAAGAAGCTGAAAAGTTATTTGTTTAA

Translation (976 aa):
MEKQKPFALFVPPRSSSSQVSAVKPQTLGGDSTFFKSFNKCTEDDFEFPFAKTNLSKNGENIDSDPALQK
VNFLPVLEQVGNSDCHYQEGLKDSDLENSEGLSRVYSKLYKEAEKIKKWKVSTEAELRQKESKLQENRKI
IEAQRKAIQELQFGNEKVSLKLEEGIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQV
YMDLNNNIEKMITAFEELRVQAENSRLEMHFKLKEDYEKIQHLEQEYKKEINDKEKQVSLLLIQITEKEN
KMKDLTFLLEESRDKVNQLEEKTKLQSENLKQSIEKQHHLTKELEDIKVSLQRSVSTQKALEEDLQIATK
TICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEKNEDQLKILTMELQKKSSELE
EMTKLTNNKEVELEELKKVLGEKETLLYENKQFEKIAEELKGTEQELIGLLQAREKEVHDLEIQLTAITT
SEQYYSKEVKDLKTELENEKLKNTELTSHCNKLSLENKELTQETSDMTLELKNQQEDINNNKKQEERMLK
QIENLQETETQLRNELEYVREELKQKRDEVKCKLDKSEENCNNLRKQVENKNKYIEELQQENKALKKKGT
AESKQLNVYEIKVNKLELELESAKQKFGEITDTYQKEIEDKKISEENLLEEVEKAKVIADEAVKLQKEID
KRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKSKEQEQSSLRASLEIELSNLKAELLSVKKQLEIE
REEKEKLKREAKENTATLKEKKDKKTQTFLLETPEIYWKLDSKAVPSQTVSRNFTSVDHGISKDKRDYLW
TSAKNTLSTPLPKAYTVKTPTKPKLQQRENLNIPIEESKKKRKMAFEFDINSDSSETTDLLSMVSEEETL
KTLYRNNNPPASHLCVKTPKKAPSSLTTPGSTLKFGAIRKMREDRWAVIAKMDRKKKLKEAEKLFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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