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Report for CCDS86878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86878.1 Public Homo sapiens 2 SLC35F5 24 110 108 CCDS HistoryNCBI Gene:80255Re-query CCDS DB by CCDS ID:86878.1Re-query CCDS DB by GeneID:80255See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86878.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409342.1 ENSP00000386991.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409342.1Link to Ensembl Protein Viewer:ENSP00000386991.1Re-query CCDS DB by Nucleotide ID:ENST00000409342Re-query CCDS DB by Protein ID:ENSP00000386991
Original member Current member NCBI NM_001330317.2 NP_001317246.1 Accepted alive Link to Nucleotide Sequence:NM_001330317.2Link to Protein Sequence:NP_001317246.1Re-query CCDS DB by Nucleotide ID:NM_001330317Re-query CCDS DB by Protein ID:NP_001317246Link to BLAST:NP_001317246.1

Chromosomal Locations for CCDS 86878.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 113742677 113742879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113743713 113743794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113746277 113746339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113750425 113750568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113755165 113755306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113755454 113755544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113755855 113755876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGATTCCTCTGGATGGAGAGGGGTGCTGAGTTCTTCACCTCCTTTTAGACTGAGATCTGCCAAGTTTT
CCGGCATTGCTCTTGAGGATCTCAGAAGGGCTCTTAAGACAAGACTGCAAATGGTGTGTGTATTTGTCAT
GAACCGAATGAATTCCCAGAACAGTGGTTTCACTCAGCGCAGGCGAATGGCTCTTGGGATTGTTATTCTT
CTGCTTGTTGATGTGATATGGGTTGCTTCCTCTGAACTTACTTCGTATGTTTTTACCCAGTACAACAAAC
CATTCTTCAGCACCTTTGCAAAAACATCTATGTTTGTTTTGTACCTTTTGGGCTTTATTATTTGGAAGCC
ATGGAGACAACAGTGTACAAGAGGACTTCGCGGAAAGCATGCTGCTTTTTTTGCAGATGCTGAAGGTTAC
TTTGCTGCTTGCACAACAGATACAACTATGAATAGTTCTTTGAGTGAACCTCTGTATGTGCCTGTGAAAT
TCCATGATCTTCCAAGTGAAAAACCTGAGAGCACAAACATTGATACTGAAAAAACCCCCAAAAAGTCTCG
TGTGAGGTTCAGTAATATCATGGAGATTCGACAGCTTCCGTCAAGTCATGCATTGGAAGCAAAGTTGTCT
CGCATGTCATATCCTGTGAAAGAACAAGAATCCATACTGAAAACTGTGGGGAAACTTACTGCAACTCAAG
TAGCGAAAATTAGCTTTTTTTTTTGCTTTGTGGTAGGTCTTTTATGA

Translation (248 aa):
MDSSGWRGVLSSSPPFRLRSAKFSGIALEDLRRALKTRLQMVCVFVMNRMNSQNSGFTQRRRMALGIVIL
LLVDVIWVASSELTSYVFTQYNKPFFSTFAKTSMFVLYLLGFIIWKPWRQQCTRGLRGKHAAFFADAEGY
FAACTTDTTMNSSLSEPLYVPVKFHDLPSEKPESTNIDTEKTPKKSRVRFSNIMEIRQLPSSHALEAKLS
RMSYPVKEQESILKTVGKLTATQVAKISFFFCFVVGLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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