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Report for CCDS80931.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80931.1 Public Mus musculus 8 Cog4 23 108 98 CCDS HistoryNCBI Gene:102339Re-query CCDS DB by CCDS ID:80931.1Re-query CCDS DB by GeneID:102339See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80931.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165867.7 ENSMUSP00000128518.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165867.7Link to Ensembl Protein Viewer:ENSMUSP00000128518.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165867Re-query CCDS DB by Protein ID:ENSMUSP00000128518
Original member Current member NCBI NM_001310607.1 NP_001297536.1 Accepted alive Link to Nucleotide Sequence:NM_001310607.1Link to Protein Sequence:NP_001297536.1Re-query CCDS DB by Nucleotide ID:NM_001310607Re-query CCDS DB by Protein ID:NP_001297536Link to BLAST:NP_001297536.1

Chromosomal Locations for CCDS 80931.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 110849928 110849950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110851336 110851450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110852286 110852460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110853670 110853863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110857937 110858042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110858537 110858694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110859886 110859944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110863251 110863384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110865977 110866095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110866561 110866727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110868202 110868367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110874146 110874208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110879006 110879122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110879633 110879725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110880595 110880678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110880875 110880976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110881371 110881499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 110881731 110881865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2139 nt):
ATGGTCACTCTCCACAGGATGGGTCCCAGCCTGCAGTTGATTGAGGGAGACGCAAAGCAACTGGCTGGAA
TG
ATCACCTTTACCTGCAGCCTAGCTGAAAACGTGTCGAGCAAAGTCCGTCAGCTTGACCTGGCCAAGAA
C
CGCCTCTATCAGGCCATTCAGAGAGCCGATGACATCTTGGACCTGAAGTTCTGCATGGATGGAGTTCAG
ACT
GCTTTGAGGAATGAGGATTATGAGCAGGCTGCAGCCCACATTCATCGTTACTTGTGCCTGGACAAGT
CA
GTCATTGAGCTCAGCCGACAAGGCAAAGAAGGAAGCATGATTGATGCCAACCTGAAATTACTGCAGGA
A
GCTGAGCAACGTCTTAAGGCCATAGTCGCAGAGAAGTTTGCTATCGCTACCAAAGAAGGTGATTTGCCC
CAG
GTGGAGCGATTCTTCAAGATCTTCCCACTGCTGGGTTTACATGAGGATGGCCTGAGCAAGTTCTCGG
AA
TACCTGTGCAAACAGGTCGCCAGTAAGGCTGAGGAGAATCTGTTGTTGGTGCTGGGCTCAGACATGAG
T
GATCGGAGAGCTGCGGTCATCTTTGCGGATACTCTCACACTCCTGTTTGAAGGGATCGCCCGAATTGTG
GAA
ACTCACCAACCCATCGTGGAGACTTACTATGGACCAGGGCGACTCTTTACCCTGATCAAATATCTTC
AA
GTAGAATGTGACACACAGGTGGAGAAGGTCGTAAACAAGTTCATCAAGCAAAGGGACTACCACCAGCA
G
TTTCGGCTCGTCCAGAGTAATTTGATGAGAAATTCTGCAACAGAAAAAATTGAACCAAGGGAGCTGGAC
CCT
GTCTTGACTGAGGTTACCCTGATGAATGCGCGAAGTGAACTGTACTTACGCTTCCTCAGGAAGAGGA
TC
AGCGCGGATTTTGAGGTGGGGGACTCCATGGCTTCAGAAGAAGTAAAGCAAGAGCACCAGAAGTGCCT
G
GACAAACTCCTCAATAACTGCCTATTGAGCTGTACCATGCAGGAGCTAATTGGCTTCTATATTACCATG
GAG
GAGTACTTCATGAGAGAGACGGTCAATAAGGCTGTGGCTCTGGATACCTATGAGAAAGGCCAGTTGA
CA
TCCAGCATGGTGGATGATGTCTTCTACATTGTCAAAAAGTGCATTGGGCGGGCTCTGTCCAGCTCTAA
C
ATCGACTGTCTCTGTGCCATGATCAACCTTGCCACCAGAGAGCTGGAAGCTGACTTCAGGGATGTTCTA
TGT
AATAAGCTAAGAATGGGCTTCCCAGCCACCACCTTACAGGACATCCAGCGTGGGGTGACAAGTGCCG
TG
AACATCATGCACAGCAGCCTCCAGCAGGGCAAGTTTGACACCAAAGGCATCGAGAGCACTGATGAAGC
C
AAGCTGTCCTTCCTGGTGACTCTGAACAATGTGGAAGTCTGCAGTGAAAACATCTCAACTCTGAAGAAG
ACT
CTGGAGAGTGACTGCACCAAGCTCTTCAGTCAGGGCATTGGAGGGGAACAGGCCCAGGCCAAGTTTG
AC
AGCTGCCTTTCTGACTTAGCTGCTGTGTCCAACAAATTTCGAGACCTCTTGCAGGAAGGGTTGGCGGA
G
CTCAACAGTTCAGCAGTCAAGCCGCAGGTGCAACCTTGGATCAACACTTTTCTCTCAGTCTCGCACAGC
ATC
GAGGAGGAAGAATTCAACGACTATGAGGCCAATGACCCCTGGGTACAGCAATTCATCCTCAACCTGG
AA
CAGCAGATGGCAGAGTTCAAGGCCAGCCTGTCCCCAGTCATCTATGACAGCCTAACCGGCCTCATGAC
C
AGCCTTGTTGCTGTTGAACTGGAAAAAGTGGTCCTGAAATCCACCTTCAACAGGCTGGGCGGTCTGCAG
TTT
GACAAGGAACTCCGGTCACTCATTGCTTACCTTACCACTGTGACAACCTGGACCATCCGAGACAAGT
TC
GCCCGCCTCTCTCAGATGGCTACAATCCTTAACCTAGAGCGGGTGACTGAGATACTAGATTACTGGGG
T
GCTAACTCTGGCCCTTTGACATGGCGCCTCACCCCTGCTGAAGTGCGACAGGTGCTGGCTCTGCGCATA
GAC
TTCCGCAATGAGGATATCAAGAGGCTGCGCCTATAG


Translation (712 aa):
MVTLHRMGPSLQLIEGDAKQLAGMITFTCSLAENVSSKVRQLDLAKNRLYQAIQRADDILDLKFCMDGVQ
T
ALRNEDYEQAAAHIHRYLCLDKSVIELSRQGKE
GSMIDANLKLLQEAEQRLKAIVAEKFAIATKEGDLP
Q
VERFFKIFPLLGLHEDGLSKFSEYLCKQ
VASKAEENLLLVLGSDMSDRRAAVIFADTLTLLFEGIARIV
E
THQPIVETYYGPGRLFTLIKYLQVECDTQVEKVVNKFIKQRDYHQQ
FRLVQSNLMRNSATEKIEPRELD
P
VLTEVTLMNARSELYLRFLRKRISADFEVGDSMASEEVKQ
EHQKCLDKLLNNCLLSCTMQELIGFYITM
E
EYFMRETVNK
AVALDTYEKGQLTSSMVDDVFYIVKKCIGRALSSSNIDCLCAMINLATRELEADFRDVL
C
NKLRMGFPATTLQDIQRGVTSAVNIMHSSLQQGKFDTKGIESTDEAKLSFL
VTLNNVEVCSENISTLKK
T
LE
SDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLAELNSSAVKPQVQPWINTFLSVSHS
I
EE
EEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLKSTFNRLGGLQ
F
DKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLER
VTEILDYWGANSGPLTWRLTPAEVRQVLALRI
D
FRNEDIKRLRL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser