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Report for CCDS80885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80885.1 Public Mus musculus 8 Ints10 23 108 98 CCDS HistoryNCBI Gene:70885Re-query CCDS DB by CCDS ID:80885.1Re-query CCDS DB by GeneID:70885See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110242.7 ENSMUSP00000105871.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110242.7Link to Ensembl Protein Viewer:ENSMUSP00000105871.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110242Re-query CCDS DB by Protein ID:ENSMUSP00000105871
Original member NCBI NM_001293791.1 NP_001280720.1 Updated not alive Link to Nucleotide Sequence:NM_001293791.1Link to Protein Sequence:NP_001280720.1Re-query CCDS DB by Nucleotide ID:NM_001293791Re-query CCDS DB by Protein ID:NP_001280720
Current member NCBI NM_001293791.2 NP_001280720.1 Accepted alive Link to Nucleotide Sequence:NM_001293791.2Link to Protein Sequence:NP_001280720.1Re-query CCDS DB by Nucleotide ID:NM_001293791Re-query CCDS DB by Protein ID:NP_001280720Link to BLAST:NP_001280720.1

Chromosomal Locations for CCDS 80885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 68794020 68794148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68794611 68794678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68796717 68796820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68797759 68797898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68802316 68802397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68802883 68803023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68804814 68804985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68807462 68807631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68808376 68808509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68810579 68810732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68811911 68811993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68813566 68813718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68814257 68814365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68819288 68819367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68820655 68820817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68822157 68822250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68824190 68824267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 68827277 68827433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2211 nt):
ATGTCGGCCCAGGGCGACTGTGAGTTTCTGGTGCAGCGAGCCCGGGAACTAGTGCCCCAGGACCTGTGGG
CAGCCAAGGCATGGCTGATCACGGCCCGCAGCCTCTACCCGGCCGACTTCAACATCCAGTATGAAATGTA
CACCATCGAACGGAATGCCGAGAGGACTGCCACCGCAGGGAGGTTGCTGTATGACATGTTTGTGAATTTC
CCGGACCAGCCGGTGGTATGGAGAGAAATCAGCATCATCACGTCAGCATTGAGGAACGACTCACAAGATA
AGCAGACCCAGTTCTTACGGAGTTTATTTGAAACCCTTCCCGGTCGGGTCCAGTGTGAAATGTTGTTGAA
GGTGACAGAGCAATGCTTCAACACGCTGGAACGATCAGAAATGTTGCTGCTGCTGCTGAGGCGTTTCCCT
GAGACAGTGGTGCAACACGGGGTTGGCCTCGGGGAGGCCCTGCTGGAAGCTGAAACCATTGAAGAACAAG
ACTCTCCTGTTAACTGCTTTAGAAAGCTATTTGTTTGTGATGTCCTTCCTCTAATAATCAACAACCATGA
TGTCCGCTTGCCCGCCAATCTCTTATATAAATACTTGAACAAAGCAGCTGAATTTTACATCAACTATGTC
ACTCGGTCCACACAGTCAGAAAATCAGCATCAAGGTGCACAGGATACATCTGATTTAATGTCGCCTAGCA
AGCGTAGCTCTCAGAAGTACATAATAGAAGGACTGACTGAGAAATCATCCCACATCGTCGACCCCTGGGA
GAGGTTGTTTAAGATTCTGAATGTTGTTGGAATGAGATGCGAATGGCAGATGGATAAAGGGAGACGAAGC
TGCAGTGACCTGCTGCACCGGATGAAGGAGCTCTGCAGATACATGAACAGCTTTGACAGCGAAGCTCACA
ACAACTATAAAAACCAAGTGCTCTACTCCACGATGCTGGTGTTCTTCAAGAGTGCGTTCCAGTACGTCAG
CAGCATACAGCCATCTCTCTTCCAAGGTCCTAACGCCCCAAGCCAGGTTCCACTAATTCTTCTGGAAGAT
GTGGCCAATGTGTATGGTGATGTAGAAATTGATCGCAGTAAACACATACACAAGAAGAGGAAGCTAGCTG
AGGGAAGAGAAAAAACCATGAGTTCAGATGATGAAGAGTGTTCAGCGAAAGGCAGAAACCGGCACATTGT
TGTCAGCAAAGCTGACCTCAGCAACTCCATCGAAGTACTGGAGAGCTTCAAACTGGCCAGGGAAAGCTGG
GAGTTACTCTACTCTCTGGAATTCCTTGACAAAGAATTTACAAGAATTTGCTTGGCTTGGAAGACAGACA
CCTGGCTGTGGCTAAGAATCTTCCTCACAGATATGATCATCTACCAGGGTCAATATAAGAAGGCCATAGC
CAGTCTGCATCACTTAGCAGCTCTGCAAGGATCCCTTTCTCAGCCACAGATCACAGGACAGGGGACTTTA
GAACACCAGAGGGCGCTCATCCAGCTGGCAACGTGTCACTTTGCTCTGGGGGAGTACAGAATGACGTGCG
AGAAAGTCCTAGATCTGATGTGTTACATGGTGCTCCCCATACAAGATGGCGGGAAGCCACAGGAAGAGCC
GTCCAAAGTAAAGCCCAAGTGTAGAAAAGGTTTGGATCTGAAGCTTCTGCCCTGTACCAGTAAGGCTATC
ATGCCATACTGCCTGCACTTGATGCTGGCCTGCTTTAAGCTGAGAGCTTTTACAGACAGCAGAGACGACA
TGGCACTGGGCCATGTGATTGTACTGCTCCAGCAGGAGTGGCCACGGGGAGAGAACCTTTTCCTGAAAGC
CATCAGTAAGATTTGCCAGCAAGGAAATTTCCAGTATGAGAACTTCTTCAGCTATGTTACAAACATTGAT
ATGCTGGAGGAATTTGCTTATTTAAGAACCCAAGAAGGAGGGAAGATTCATCTGGAATTACTCCCAAATC
AAGGAATGCTGATCAACCATTGCAGACCTTTTGGGTGGTCCCTCCAGATGAGTGGCAGAGATGTTGTGAG
CAGTGTACCTCTCCTCCCCTTGGGGCACCACACAGTCACTCGAGGCATCACCAAAGGTGTGAAGGAGGAC
TTCCGCCTGGCCATGGAGCGCCAGGTCTCCCGCTGTGGTGAGAACCTGATGGCGGTACTACATCGCTTCT
GCATTAATGAGAAGATCTTGCTCCTGCAGACTCTGACCTGA

Translation (736 aa):
MSAQGDCEFLVQRARELVPQDLWAAKAWLITARSLYPADFNIQYEMYTIERNAERTATAGRLLYDMFVNF
PDQPVVWREISIITSALRNDSQDKQTQFLRSLFETLPGRVQCEMLLKVTEQCFNTLERSEMLLLLLRRFP
ETVVQHGVGLGEALLEAETIEEQDSPVNCFRKLFVCDVLPLIINNHDVRLPANLLYKYLNKAAEFYINYV
TRSTQSENQHQGAQDTSDLMSPSKRSSQKYIIEGLTEKSSHIVDPWERLFKILNVVGMRCEWQMDKGRRS
CSDLLHRMKELCRYMNSFDSEAHNNYKNQVLYSTMLVFFKSAFQYVSSIQPSLFQGPNAPSQVPLILLED
VANVYGDVEIDRSKHIHKKRKLAEGREKTMSSDDEECSAKGRNRHIVVSKADLSNSIEVLESFKLARESW
ELLYSLEFLDKEFTRICLAWKTDTWLWLRIFLTDMIIYQGQYKKAIASLHHLAALQGSLSQPQITGQGTL
EHQRALIQLATCHFALGEYRMTCEKVLDLMCYMVLPIQDGGKPQEEPSKVKPKCRKGLDLKLLPCTSKAI
MPYCLHLMLACFKLRAFTDSRDDMALGHVIVLLQQEWPRGENLFLKAISKICQQGNFQYENFFSYVTNID
MLEEFAYLRTQEGGKIHLELLPNQGMLINHCRPFGWSLQMSGRDVVSSVPLLPLGHHTVTRGITKGVKED
FRLAMERQVSRCGENLMAVLHRFCINEKILLLQTLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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