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Report for CCDS80073.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80073.1 Public Mus musculus 3 Lrrc7 23 108 98 CCDS HistoryNCBI Gene:242274Re-query CCDS DB by CCDS ID:80073.1Re-query CCDS DB by GeneID:242274See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 80073.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000200137.4 ENSMUSP00000142498.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200137.4Link to Ensembl Protein Viewer:ENSMUSP00000142498.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200137Re-query CCDS DB by Protein ID:ENSMUSP00000142498
Original member NCBI NM_001291452.2 NP_001278381.1 Updated not alive Link to Nucleotide Sequence:NM_001291452.2Link to Protein Sequence:NP_001278381.1Re-query CCDS DB by Nucleotide ID:NM_001291452Re-query CCDS DB by Protein ID:NP_001278381
Current member NCBI NM_001291452.3 NP_001278381.1 Accepted alive Link to Nucleotide Sequence:NM_001291452.3Link to Protein Sequence:NP_001278381.1Re-query CCDS DB by Nucleotide ID:NM_001291452Re-query CCDS DB by Protein ID:NP_001278381Link to BLAST:NP_001278381.1

Chromosomal Locations for CCDS 80073.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 158084439 158084546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158104428 158104502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158127215 158127307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158135188 158135409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158148580 158148699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158160233 158161913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158163892 158164072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158164275 158164386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158170556 158170756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158175103 158175351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158177209 158177333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158179765 158179864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158181541 158181610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158185378 158185493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158186976 158187105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158198117 158198189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158202350 158202494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158209690 158209764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158240449 158240512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158288980 158289036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158291933 158292022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158303337 158303415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158318435 158318552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158353265 158353467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158413130 158413130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4488 nt):
ATGCAGTGCTTGGAGATGACCACCAAACGGAAGCTCATTGGCCGCCTGGTGCCATGCCGCTGCTTCCGTG
GAGAGGAAGAGATCATCTCAGTGTTGGATTACTCCCACTGCAGCCTGCAACAGGTGCCCAAGGAGGTCTT
CAACTTCGAACGCACACTAGAAGAGCTCTATCTGGATGCCAATCAGATTGAGGAGCTACCTAAGCAATTG
TTCAACTGTCAAGCTCTACGGAAACTAAGCATTCCTGATAATGACCTCTCAAGTCTGCCAACCTCCATTG
CTAGCCTAGTTAACCTGAAAGAACTCGACATCAGTAAAAACGGTGTACAAGAATTTCCAGAAAACATAAA
GTGCTGTAAGTGTTTAACCATAATTGAAGCCAGTGTCAATCCCATTTCTAAACTACCCGATGGCTTCACG
CAGCTTCTTAACCTGACCCAGCTCTACCTGAATGACGCATTCCTCGAATTTCTTCCAGCTAATTTTGGAA
GACTTGTCAAATTGCGAATACTGGAGTTAAGAGAAAATCACTTGAAAACTCTACCAAAGTCAATGCACAA
GTTAGCCCAGCTGGAAAGACTTGACCTAGGCAATAATGAATTCAGCGAGCTGCCTGAAGTTCTGGATCAA
ATACAGAATTTGAGGGAGCTGTGGATGGATAACAATGCATTGCAAGTGCTGCCTGGGTCTATAGGGAAGT
TAAAGATGTTGGTATACCTGGATATGTCAAAAAACAGGATAGAAACGGTTGATATGGATATTTCTGGATG
TGAAGCCCTCGAGGACCTCTTACTATCATCCAATATGTTGCAACAGCTGCCTGACTCAATAGGATTGCTG
AAAAAGTTAACAACTCTAAAAGTAGATGACAATCAACTTACAATGCTACCCAACACAATTGGAAACTTAT
CTTTATTAGAAGAATTTGACTGCAGCTGCAACGAGCTGGAGTCCCTCCCTCCCACCATTGGTTACCTGCA
CAGCCTTCGAACATTAGCGGTTGACGAGAATTTCCTCCCAGAGTTGCCAAGAGAAATTGGAAGCTGTAAG
AATGTCACCGTTATGTCTCTACGCTCCAATAAGCTAGAATTTCTTCCTGAAGAAATTGGGCAGATGCAGA
GACTGCGTGTCTTAAATCTAAGTGATAATAGGTTGAAGAATTTGCCATTCTCTTTCACCAAACTCAAAGA
GCTTGCAGCATTGTGGCTTTCTGACAATCAGTCCAAGGCCCTTATCCCTCTGCAAACAGAAGCCCACCCA
GAAACCAAGCAAAGGGTACTAACCAACTACATGTTTCCCCAGCAGCCCCGTGGTGACGAAGATTTCCAGT
CAGACAGCGACAGCTTCAACCCCACCCTGTGGGAGGAGCAGAGACAACAGCGCATGACTGTTGCCTTTGA
ATTTGAGGATAAAAAAGAAGATGACGAAAGTGCTGGGAAAGTTAAGGCTCTCTCCTGCCAAGCCCCCTGG
GACAGGGGCCAGCGTGGGATTACTCTCCAACCTGCCAGGCTGTCTGGCGATTGCTGCACACCATGGGCCA
GGTGTGATCAGCAGATCCAAGATATGCCCGTCCCCCAGAGTGACCCCCAGCTGGCATGGGGTTGTATAAG
TGGCCTCCAGCAGGAGAGGAGCATGTGTGCTCCATTGCCAGTGGCAGCACAGTCCACCACTCTTCCCTCT
CTAAGTGGCAGACAGGTTGAAATAAACCTAAAACGATATCCAACTCCTTACCCGGAGGATTTAAAGAATA
TGGTAAAATCTGTTCAAAATCTGGTGGGTAAGCCAAGCCATGGAGTGCGTGTTGAGAACTCAAATCCAAC
AGCTAACACGGAGCAAACTGTGAAAGAAAAGTTTGAACACAAGTGGCCGGTGGCCCCAAAGGAGATTACA
GTGGAGGATTCTTTTGTTCATCCAGCTAATGAAATGAGGATTGGGGAACTTCACCCTTCATTAGCTGAGA
CCCCTCTGTACCCACCCAAACTTGTTCTGCTAGGGAAGGACAAAAAAGAATCAACTGATGAGTCTGAAGT
TGACAAAACTCACTGTCTGAATAACAGTGTCTCCTCAGGCACCTACTCAGACTACTCGCCCTCCCAAGCT
TCCTCGGCATCCTCTAACACCCGGATGAAAGTGGGGTCCTTGCAGGCAACAGCTAAAGATGCCGTCCATA
ACTCTTTGTGGGGTAACAGGATTGCACCACCTTTCCCACAGCCTCTAGATGCAAAGCCATTACTCAGCCA
ACGGGAGGCTGTCCCTCCAGGGAACATCCCCCAGCGTCCTGATAGGCTGCCAATGAGTGATGCTTTCCCT
GACAACTGGACTGATGGCTCCCATTACGACAACACTGGTTTTGTCTCCGAGGAAGCCGCAGGCGAAAATG
CCAACAATAACCCTCTCTTAAGTTCCAAGGCTAGAAGCGTACCTGCTCATGGGCGCAGGCCTTTAATTAG
GCAAGAAAGGATTGTCGGTGTTCCCCTGGAACTGGAGCAGTCCACACACAGACACACACCAGAAACAGAA
GTGCCTCCTTCCAATCCCTGGCAGAATTGGACCAGAACTCCCAGTCCATTTGAAGATAGGACTGCTTTTC
CTTCCAAATTAGAAACAACCCCTACTACCAGTCCCTTGCCTGAAAGAAAAGACCACATGAAGGAGCCTAC
AGAGACACCAGGTCCCTTTTCTCCGGGAGTGCCATGGGAATACCACGACCCCACCCCTAACAGGAGTCTC
GGTAATGTCTTTTCTCAAATCCACTGCCGCCCAGATTCGTCTAAAGGTGTTATCGCAATTAGCAAAAGCA
CAGAGAGGCTTTCCCCGCTCATGAAAGATATAAAGTCCAACAAGTTCAAAAAGTCCCAGAGTATTGATGA
GATTGACGTCGGTACCTACAAGGTCTATAACATTCCACTAGAAAACTATGCCTCTGGGAGCGATCACTTA
GGAAGCCATGAGCGGCCAGACAAGTTCTTGGGACCAGAGCATGGCATGTCCAGTATGTCCAGGAGCCAGT
CAGTACCCATGTTGGATGACGAGATGCTCATGTATGGAAGTAGTAAAGGCCCACCCCAACAAAAAGCGTC
TATGACTAAGAAGGTCTATCAGTTTGACCAAAGCTTCAACCCACAAGGAGCGGTGGAAGTAAAAGCCGAG
AAGAGGATTCCACCCCCTTTTGCACACAATTCTGAGTATGTACAGCAGCCCAGTAAAAACATCGCCAAGG
ATCTGGTCAGCCCCAGAGCCTACAGAGGATACCCACCCATGGAACAGATGTTCTCCTTTTCCCAGCCATC
TGTAAATGAGGATGCCATGGTGAATGCTCAGTTCGCCAGCCAGGGGCCCAGGGCAGGCTTCCTAAGGAGG
GCTGACTCCCTGGCCAGCTCCACCGAGATGGCCATGTTCAGAAGGGTCAGTGAGCCCCACGAGCTGCCCC
CTGGTGACAGGTATGGCCGAGCAACCTATAGGGGTGGGCTGGAAGGCCAGAGCAGCATTTCAATGACTGA
TCCCCAATTCCTCAAGAGGAATGGCAGGTACGAAGATGAGCACCCTTCATATCAAGAAGTGAAAGCGCAG
GCGGGAAGTTTTCCTGCTAAAAACCTTACCCAGAGGAGGCCGCTGTCTGCCAGGAGCTACAGCACAGAGA
GTTATGGGGCCTCCCAAACCAGGCCAGTTTCAGCTAGGCCTACCATGGCAGCCCTCCTGGAAAAAATACC
ATCTGACTATAACTTGGGTAACTATGGTGACAAGACATCAGATAACAGTGATATAAAGACAAGGCCCACC
CCTGTGAAGGGAGAGGAGAGCTGTGGCAAAATGCCGGCAGACTGGAGACAGCAGCTGCTTAGACATATAG
AAGCTAGAAGGTTAGACAGGACCCCGTCCCAGCAAAGCAACATTTTAGACAATGGACAAGAAGATGTCTC
TCCTAGTGGCCAATGGAATCCTTACCCACTTGGGAGGCGGGATGTACCTCCGGACACCATTACTAAAAAG
GCAGGCAGCCACATTCAGACCCTGATGGGGTCACAGAGCCTTCAGCACCGCAGCCGGGAGCAGCAGCCAT
ATGAAGGGAACATCAACAAAGTGACCATTCAGCAGTTCCAATCGCCATTGCCCATCCAGATCCCCTCATC
ACAGGCTACCCGGGGACCTCAGCCTGGACGGTGCTTAATTCAAACGAAAGGGCAGAGGAGTATGGACGGT
TATCCCGAGCAGTTCTGTGTGAGGATAGAAAAGAATCCTGGGCTTGGATTTAGTATCAGCGGTGGAATTA
GTGGGCAAGGAAATCCTTTCAAACCTTCTGACAAGGGTATCTTTGTTACTAGGGTTCAGCCTGATGGACC
AGCATCCAACCTACTACAGCCCGGGGATAAAATCCTTCAGGCAAATGGACACAGTTTTGTGCATATGGAA
CATGAAAAGGCTGTTTTACTACTGAAGAGCTTCCAGAACACAGTAGACCTAGTTATTCAACGTGAGCTCA
CTGTCTAA

Translation (1495 aa):
MQCLEMTTKRKLIGRLVPCRCFRGEEEIISVLDYSHCSLQQVPKEVFNFERTLEELYLDANQIEELPKQL
FNCQALRKLSIPDNDLSSLPTSIASLVNLKELDISKNGVQEFPENIKCCKCLTIIEASVNPISKLPDGFT
QLLNLTQLYLNDAFLEFLPANFGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNNEFSELPEVLDQ
IQNLRELWMDNNALQVLPGSIGKLKMLVYLDMSKNRIETVDMDISGCEALEDLLLSSNMLQQLPDSIGLL
KKLTTLKVDDNQLTMLPNTIGNLSLLEEFDCSCNELESLPPTIGYLHSLRTLAVDENFLPELPREIGSCK
NVTVMSLRSNKLEFLPEEIGQMQRLRVLNLSDNRLKNLPFSFTKLKELAALWLSDNQSKALIPLQTEAHP
ETKQRVLTNYMFPQQPRGDEDFQSDSDSFNPTLWEEQRQQRMTVAFEFEDKKEDDESAGKVKALSCQAPW
DRGQRGITLQPARLSGDCCTPWARCDQQIQDMPVPQSDPQLAWGCISGLQQERSMCAPLPVAAQSTTLPS
LSGRQVEINLKRYPTPYPEDLKNMVKSVQNLVGKPSHGVRVENSNPTANTEQTVKEKFEHKWPVAPKEIT
VEDSFVHPANEMRIGELHPSLAETPLYPPKLVLLGKDKKESTDESEVDKTHCLNNSVSSGTYSDYSPSQA
SSASSNTRMKVGSLQATAKDAVHNSLWGNRIAPPFPQPLDAKPLLSQREAVPPGNIPQRPDRLPMSDAFP
DNWTDGSHYDNTGFVSEEAAGENANNNPLLSSKARSVPAHGRRPLIRQERIVGVPLELEQSTHRHTPETE
VPPSNPWQNWTRTPSPFEDRTAFPSKLETTPTTSPLPERKDHMKEPTETPGPFSPGVPWEYHDPTPNRSL
GNVFSQIHCRPDSSKGVIAISKSTERLSPLMKDIKSNKFKKSQSIDEIDVGTYKVYNIPLENYASGSDHL
GSHERPDKFLGPEHGMSSMSRSQSVPMLDDEMLMYGSSKGPPQQKASMTKKVYQFDQSFNPQGAVEVKAE
KRIPPPFAHNSEYVQQPSKNIAKDLVSPRAYRGYPPMEQMFSFSQPSVNEDAMVNAQFASQGPRAGFLRR
ADSLASSTEMAMFRRVSEPHELPPGDRYGRATYRGGLEGQSSISMTDPQFLKRNGRYEDEHPSYQEVKAQ
AGSFPAKNLTQRRPLSARSYSTESYGASQTRPVSARPTMAALLEKIPSDYNLGNYGDKTSDNSDIKTRPT
PVKGEESCGKMPADWRQQLLRHIEARRLDRTPSQQSNILDNGQEDVSPSGQWNPYPLGRRDVPPDTITKK
AGSHIQTLMGSQSLQHRSREQQPYEGNINKVTIQQFQSPLPIQIPSSQATRGPQPGRCLIQTKGQRSMDG
YPEQFCVRIEKNPGLGFSISGGISGQGNPFKPSDKGIFVTRVQPDGPASNLLQPGDKILQANGHSFVHME
HEKAVLLLKSFQNTVDLVIQRELTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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