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Report for CCDS7971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7971.1 Public Homo sapiens 11 GLYAT 24 110 108 CCDS HistoryNCBI Gene:10249Re-query CCDS DB by CCDS ID:7971.1Re-query CCDS DB by GeneID:10249See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7971.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278400.3 ENSP00000278400.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000278400.3Link to Ensembl Protein Viewer:ENSP00000278400.3Re-query CCDS DB by Nucleotide ID:ENST00000278400Re-query CCDS DB by Protein ID:ENSP00000278400
Original member Current member NCBI NM_005838.4 NP_005829.3 Accepted alive Link to Nucleotide Sequence:NM_005838.4Link to Protein Sequence:NP_005829.3Re-query CCDS DB by Nucleotide ID:NM_005838Re-query CCDS DB by Protein ID:NP_005829Link to BLAST:NP_005829.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005829.3 163 Q6IB77-2 163 100% 0 0

Chromosomal Locations for CCDS 7971.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58710586 58710761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58712760 58712886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58715316 58715423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 58724416 58724496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGATGTTACCATTGCAAGGTGCCCAGATGCTGCAGATGCTGGAGAAATCCTTGAGGAAGAGCCTCCCAG
CATCCTTAAAGGTTTATGGAACTGTCTTTCACATAAACCATGGAAATCCATTCAATCTGAAGGCTGTGGT
GGACAAGTGGCCTGATTTTAATACAGTGGTTGTCTGCCCTCAGGAGCAGGATATGACAGATGACCTTGAT
CACTATACCAATACTTACCAAATCTACTCCAAAGATCCCCAAAACTGTCAGGAATTCCTTGGATCACCAG
AACTCATCAACTGGAAACAGCATTTACAGATTCAAAGTTCACAGCCTAGCCTGAATGAGGCTATACAAAA
TCTTGCAGCCATTAAGTCCTTCAAAGTCAAACAAACACAACGCATTCTCTATATGGCAGCTGAAACAGCC
AAGGAACTGACTCCTTTCCTGCTGAAATCAAAGATTTTATCTCCCAATGGTGGCAAACCCAAGGCCATGT
GA

Translation (163 aa):
MMLPLQGAQMLQMLEKSLRKSLPASLKVYGTVFHINHGNPFNLKAVVDKWPDFNTVVVCPQEQDMTDDLD
HYTNTYQIYSKDPQNCQEFLGSPELINWKQHLQIQSSQPSLNEAIQNLAAIKSFKVKQTQRILYMAAETA
KELTPFLLKSKILSPNGGKPKAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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