NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS78860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78860.1 Public Mus musculus 10 Mbd3 23 108 98 CCDS HistoryNCBI Gene:17192Re-query CCDS DB by CCDS ID:78860.1Re-query CCDS DB by GeneID:17192See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105349.7 ENSMUSP00000100986.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105349.7Link to Ensembl Protein Viewer:ENSMUSP00000100986.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105349Re-query CCDS DB by Protein ID:ENSMUSP00000100986
Original member Current member NCBI NM_001306143.1 NP_001293072.1 Accepted alive Link to Nucleotide Sequence:NM_001306143.1Link to Protein Sequence:NP_001293072.1Re-query CCDS DB by Nucleotide ID:NM_001306143Re-query CCDS DB by Protein ID:NP_001293072Link to BLAST:NP_001293072.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293072.1 253 Q9Z2D8-2 253 100% 0 0

Chromosomal Locations for CCDS 78860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80393100 80393280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80393893 80394070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80394566 80394656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80395064 80395201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80395436 80395595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80399218 80399231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGGAGCGGAAGAGCCCCAGCGGGAAGAAGTTCCGCAGCAAGCCACAACTGGCACGTTACCTGGGCGGAT
CC
ATGGACCTCAGCACCTTCGACTTCCGCACCGGAAAGATGTTGATGAACAAGATGAATAAGAGTCGCCA
G
CGTGTGCGCTATGATTCTTCCAACCAGGTCAAGGGCAAGCCTGACCTGAACACCGCGCTGCCTGTACGG
CAG
ACTGCATCCATCTTCAAGCAACCGGTGACCAAGATCACCAACCACCCCAGCAACAAGGTCAAGAGCG
AC
CCGCAGAAGGCAGTGGACCAGCCGAGGCAGCTTTTCTGGGAGAAGAAGCTAAGTGGATTGAGTGCCTT
T
GACATTGCAGAAGAACTGGTCAGGACCATGGACTTGCCCAAGGGCCTGCAGGGAGTGGGCCCTGGCTGT
ACA
GATGAGACGCTGCTGTCAGCCATTGCGAGTGCTCTACACACCAGCACCCTGCCCATTACAGGCCAGC
TC
TCTGCAGCCGTGGAGAAGAACCCTGGTGTGTGGCTGAACACTGCACAGCCACTGTGCAAAGCCTTCAT
G
GTGACAGATGACGACATCAGGAAGCAGGAGGAGCTGGTACAGCAGGTACGGAAGCGCCTGGAGGAGGCA
CTG
ATGGCCGACATGCTAGCTCATGTGGAGGAGCTTGCCCGAGACGGGGAGGCACCACTGGACAAGGCCT
GT
GCAGAGGAGGAAGAGGAGGAGGAAGAGGAGGAGGAAGAGCCGGAGCCAGAGCGAGTGTAG


Translation (253 aa):
MERKSPSGKKFRSKPQLARYLGGSMDLSTFDFRTGKMLMNKMNKSRQRVRYDSSNQVKGKPDLNTALPVR
Q
TASIFKQPVTKITNHPSNKVKSDPQKAVDQPRQ
LFWEKKLSGLSAFDIAEELVRTMDLPKGLQGVGPGC
T
DETLLSAIASALHTSTLPITGQLSAAVEKNPGVWLNTAQPLCKAFMVTDDDI
RKQEELVQQVRKRLEEA
L
MADMLAHVEELARDGEAPLDKACAEEEEEEEEEEEEPEPERV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser