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Report for CCDS72861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72861.1 Public Homo sapiens 1 CD160 24 110 108 CCDS HistoryNCBI Gene:11126Re-query CCDS DB by CCDS ID:72861.1Re-query CCDS DB by GeneID:11126See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72861.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000235933.10 ENSP00000235933.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000235933.10Link to Ensembl Protein Viewer:ENSP00000235933.6Re-query CCDS DB by Nucleotide ID:ENST00000235933Re-query CCDS DB by Protein ID:ENSP00000235933
Original member Current member EBI ENST00000369288.7 ENSP00000358294.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369288.7Link to Ensembl Protein Viewer:ENSP00000358294.1Re-query CCDS DB by Nucleotide ID:ENST00000369288Re-query CCDS DB by Protein ID:ENSP00000358294
Original member Current member NCBI NM_007053.4 NP_008984.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007053.4Link to Protein Sequence:NP_008984.1Re-query CCDS DB by Nucleotide ID:NM_007053Re-query CCDS DB by Protein ID:NP_008984Link to BLAST:NP_008984.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008984.1 181 O95971-1 181 100% 0 0

Chromosomal Locations for CCDS 72861.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 145728328 145728400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145730744 145731070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145735997 145736134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145738486 145738493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGCTGTTGGAACCCGGCAGAGGCTGCTGTGCCCTGGCCATCCTGCTGGCAATTGTGGACATCCAGTCTG
GTGGATGCATTAACATCACCAGCTCAGCTTCCCAGGAAGGAACGCGACTAAACTTAATCTGTACTGTATG
GCATAAGAAAGAAGAGGCTGAGGGGTTTGTAGTGTTTTTGTGCAAGGACAGGTCTGGAGACTGTTCTCCT
GAGACCAGTTTAAAACAGCTGAGACTTAAAAGGGATCCTGGGATAGATGGTGTTGGTGAAATATCATCTC
AGTTGATGTTCACCATAAGCCAAGTCACACCGTTGCACAGTGGGACCTACCAGTGTTGTGCCAGAAGCCA
GAAGTCAGGTATCCGCCTTCAGGGCCATTTTTTCTCCATTCTATTCACAGAGACAGGGAACTACACAGTG
ACGGGATTGAAACAAAGACAACACCTTGAGTTCAGCCATAATGAAGGCACTCTCAGTTCAGGCTTCCTAC
AAGAAAAGGTCTGGGTAATGCTGGTCACCAGCCTTGTGGCCCTTCAAGCTTTGTAA

Translation (181 aa):
MLLEPGRGCCALAILLAIVDIQSGGCINITSSASQEGTRLNLICTVWHKKEEAEGFVVFLCKDRSGDCSP
ETSLKQLRLKRDPGIDGVGEISSQLMFTISQVTPLHSGTYQCCARSQKSGIRLQGHFFSILFTETGNYTV
TGLKQRQHLEFSHNEGTLSSGFLQEKVWVMLVTSLVALQAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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