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Report for CCDS71583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71583.1 Public Mus musculus 5 Stx18 23 108 98 CCDS HistoryNCBI Gene:71116Re-query CCDS DB by CCDS ID:71583.1Re-query CCDS DB by GeneID:71116See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71583.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031008.12 ENSMUSP00000031008.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031008.12Link to Ensembl Protein Viewer:ENSMUSP00000031008.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031008Re-query CCDS DB by Protein ID:ENSMUSP00000031008
Original member Current member NCBI NM_001289535.1 NP_001276464.1 Accepted alive Link to Nucleotide Sequence:NM_001289535.1Link to Protein Sequence:NP_001276464.1Re-query CCDS DB by Nucleotide ID:NM_001289535Re-query CCDS DB by Protein ID:NP_001276464Link to BLAST:NP_001276464.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276464.1 308 Q8VDS8-3 308 100% 0 0

Chromosomal Locations for CCDS 71583.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 38039332 38039499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38092513 38092580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38104878 38104993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38106564 38106641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38106826 38106892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38116085 38116197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38121211 38121299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38126932 38126990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38128044 38128113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38135222 38135302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38136355 38136372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGCGGTGGACATCACACTGCTCTTCCGGGCTAGCGTCAAGACAGTGAAGACGCGGAATAAGGCTCTGG
GAGTGGCCGTGGGTGGCGGGGCCGATGGCAGCCGGGACGAGCTGTTCCGCAGAAGCCCTCGGCCCAAGGG
AGACTTCTCCAGCCGGGCCCGTGAAGTGATTTCTCACATTGGGAAGCTGAGAGATTTTCTCCTGGAGCAC
AGGAAGGAGTATATTAATGCCTACAGCCACACCATGTCTGACTATGGGAGGATGACAGACACAGAGCGAG
ACCAGATAGACCAGGATGCTCAGATATTCATAAGGACCTGTTCAGAAGCAATCCATCAACTCAGAACAGA
AGCCCACAAGGAGATACATTCCCAGCAAGTGAAGGAACACAGGACTGCCGTTTTGGATTTCGTTGACGAT
TACTTAAAAAGAGTGTGTAAGCTTTACTCTGAACAAAGAGCCATCCGAGTGAAGCGCGTGGTGGACAAGA
AAAGACTATCTAAGCTGGAACCTGAGCCACATACCAAGAGGAAAGACTCCACATCTGAGAAAGCCCCTCA
GAACGCTTCCCAGGACTCTGAAGGAAAGCCTGCTGCTGAGGAGCTGCCAGAAAAGCCTTTGGCTGAATCA
CAGCCCGAACTGGGAACCTGGGGCGATGGCAAGGGTGAAGATGAGCTGTCTCCAGAAGAGATACAGATGT
TTGAACAAGAAAATCAGCGACTCATTGGTGAAATGAACAGCTTGTTTGACGAAGTGAGGCAAATCGAAGG
GAAAGTCGTTGAAATTTCCAGACTCCAAGAGATATTCACCGAAAAGGTTTTGCAACAGGAAACTGAGATC
GACAGCATTCACCAGTTAGTCGTGGGGGCAACTGAAAATATTAAGGAAGGCAACGAAGACATCCGAGAGC
TAGCCCACCAGGGCTGA

Translation (308 aa):
MAVDITLLFRASVKTVKTRNKALGVAVGGGADGSRDELFRRSPRPKGDFSSRAREVISHIGKLRDFLLEH
RKEYINAYSHTMSDYGRMTDTERDQIDQDAQIFIRTCSEAIHQLRTEAHKEIHSQQVKEHRTAVLDFVDD
YLKRVCKLYSEQRAIRVKRVVDKKRLSKLEPEPHTKRKDSTSEKAPQNASQDSEGKPAAEELPEKPLAES
QPELGTWGDGKGEDELSPEEIQMFEQENQRLIGEMNSLFDEVRQIEGKVVEISRLQEIFTEKVLQQETEI
DSIHQLVVGATENIKEGNEDIRELAHQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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