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Report for CCDS70257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70257.1 Public Mus musculus 11 Tlcd1 23 108 98 CCDS HistoryNCBI Gene:68385Re-query CCDS DB by CCDS ID:70257.1Re-query CCDS DB by GeneID:68385See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092880.13 ENSMUSP00000090556.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092880.13Link to Ensembl Protein Viewer:ENSMUSP00000090556.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000092880Re-query CCDS DB by Protein ID:ENSMUSP00000090556
Original member Current member NCBI NM_001291236.1 NP_001278165.1 Accepted alive Link to Nucleotide Sequence:NM_001291236.1Link to Protein Sequence:NP_001278165.1Re-query CCDS DB by Nucleotide ID:NM_001291236Re-query CCDS DB by Protein ID:NP_001278165Link to BLAST:NP_001278165.1
Original member Current member NCBI NM_001291237.2 NP_001278166.1 Accepted alive Link to Nucleotide Sequence:NM_001291237.2Link to Protein Sequence:NP_001278166.1Re-query CCDS DB by Nucleotide ID:NM_001291237Re-query CCDS DB by Protein ID:NP_001278166Link to BLAST:NP_001278166.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278165.1 230 Q99JT6-3 230 100% 0 0
NP_001278166.1 230 Q99JT6-3 230 100% 0 0

Chromosomal Locations for CCDS 70257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 78179079 78179221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78179370 78179452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78179540 78179622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78179947 78180330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGAGATGGCCGTGGGATCTTTCGCGGGGTGCTCGGACTGGGCTCCCTCTTGCTATTCCCATCACGGGTG
AACAGACGCCAAGGATCTCACCTGATTCCGTTTGGAAAACTACCCAACCAAGAACGGCTGTGGGAAACCC
AAGCTTATGGCAAACCCCTGAAATGCTGGTGGAGATTGAAACAGCGTGGTCAGCTTCTGGCTATTTGCTT
GTTTGCTTCTCTGCAGGATACTTTATCCACGACACAGTGGACATTGTGGTTAGCAAGCAAACTCGAGCTT
CTTGGGAATACCTTGTTCATCATGTCATGGCTATGGGCGCCTTCTTCTCTGGTATCTTTTGGAAAAGATT
TGTTGGTGGTGGCGTCTTAACACTACTGGTAGAGGTCAGCAACATCTTCCTCACCTTAAGGATGATGATG
AAGATAAACAATGCTCAGGATCTCCTCCTCTACAAGGTCAACAAGTATATCAACTTGGTCATGTACTTCC
TCTTCCGATTGGCCCCTCAGGCCTACCTCACCAAGTTCTTCCTACAGTATGCTGGCCAGAGGACCCTGGG
CACATTCTTGTTGGCCATCCTGCTCATGCTGGACTTGATGATAATCATCTACTTTTCTCGCCTCCTCCGC
TCTGATTTCTGCCCTGAACGTGCACCCAGGCGCCAACAAAAAGACAAATTCTTGACTGAGTGA

Translation (230 aa):
MRWPWDLSRGARTGLPLAIPITGEQTPRISPDSVWKTTQPRTAVGNPSLWQTPEMLVEIETAWSASGYLL
VCFSAGYFIHDTVDIVVSKQTRASWEYLVHHVMAMGAFFSGIFWKRFVGGGVLTLLVEVSNIFLTLRMMM
KINNAQDLLLYKVNKYINLVMYFLFRLAPQAYLTKFFLQYAGQRTLGTFLLAILLMLDLMIIIYFSRLLR
SDFCPERAPRRQQKDKFLTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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