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Report for CCDS6487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6487.1 Public Homo sapiens 9 SAXO1 24 110 108 CCDS HistoryNCBI Gene:158297Re-query CCDS DB by CCDS ID:6487.1Re-query CCDS DB by GeneID:158297See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6487.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380534.9 ENSP00000369907.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380534.9Link to Ensembl Protein Viewer:ENSP00000369907.4Re-query CCDS DB by Nucleotide ID:ENST00000380534Re-query CCDS DB by Protein ID:ENSP00000369907
Original member Current member NCBI NM_153707.4 NP_714918.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153707.4Link to Protein Sequence:NP_714918.2Re-query CCDS DB by Nucleotide ID:NM_153707Re-query CCDS DB by Protein ID:NP_714918Link to BLAST:NP_714918.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_714918.2 474 Q8IYX7 474 100% 0 0

Chromosomal Locations for CCDS 6487.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 18928052 18929055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18941637 18941839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 18950758 18950937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 19032871 19032908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGAAGACGAAGTGCATCTGTGAACTGTGCTCCTGCGGGCGGCATCACTGTCCACATCTCCCTACCAAGA
TTTATGATAAAACAGAGAAACCATGTCTTCTCTCCGAATATACCGAGAACTACCCTTTCTATCACTCCTA
CCTGCCCAGAGAGTCCTTCAAGCCAAGGCGGGAGTACCAGAAAGGGCCTATACCAATGGAAGGCCTGACT
ACATCAAGGAGAGATTTTGGGCCTCACAAAGTGGCACCAGTGAAGGTCCACCAGTATGACCAGTTCGTCC
CGAGTGAAGAGAATATGGATTTGCTCACGACGTATAAGAAAGATTACAATCCCTACCCTGTCTGTCGAGT
GGACCCCATCAAACCTCGGGACAGTAAATATCCATGTAGCGACAAGATGGAGTGTTTGCCTACTTATAAA
GCTGATTATTTGCCTTGGAACCAACCAAGGCGAGAGCCACTTCGTCTGGAACACAAATACCAGCCGGCAT
CAGTCAGGTTTGATAACAGAACCACACACCAGGACGATTACCCCATAAAAGGCCTTGTGAAGACCATAAG
CTGTAAACCTCTGGCCATGCCAAAGCTCTGTAACATCCCCTTGGAGGATGTGACTAACTACAAGATGAGC
TATGTGGCCCACCCCGTGGAGAAGCGCTTTGTGCATGAAGCAGAGAAGTTCAGGCCCTGTGAAATCCCCT
TTGAAAGCCTTACCACTCAAAAACAATCCTACCGGGGCCTGATGGGGGAGCCTGCCAAGAGCTTGAAACC
TCTAGCCAGGCCTCCTGGGCTAGACATGCCTTTCTGTAACACCACTGAGTTTCGAGATAAGTACCAAGCT
TGGCCAATGCCCCGGATGTTCTCCAAAGCTCCCATCACCTACGTCCCTCCCGAAGACAGGATGGATCTTC
TGACAACAGTGCAGGCCCATTACACATGCCCTAAGGGTGCCCCAGCTCAGTCCTGCCGACCTGCACTTCA
GATTAAGAAGTGCGGTCGCTTTGAAGGCTCTTCCACCACCAAGGATGACTACAAGCAGTGGTCCAGCATG
CGCACAGAGCCAGTCAAGCCCGTTCCCCAGCTGGACTTGCCCACCGAGCCCCTGGACTGCCTGACCACCA
CTCGGGCCCACTATGTGCCCCACCTGCCTATCAATACCAAAAGCTGTAAGCCTCATTGGTCTGGCCCTCG
AGGAAATGTCCCTGTGGAAAGCCAGACCACCTACACCATCAGCTTTACTCCCAAGGAAATGGGCAGGTGC
CTAGCTTCATATCCTGAGCCTCCTGGCTACACCTTTGAGGAAGTGGATGCTTTGGGTCACAGGATATACA
AACCAGTTTCCCAGGCAGGCTCTCAGCAGAGCAGCCATCTTTCTGTAGATGATTCAGAAAACCCCAACCA
GAGGGAGTTGGAAGTGTTAGCCTGA

Translation (474 aa):
MKTKCICELCSCGRHHCPHLPTKIYDKTEKPCLLSEYTENYPFYHSYLPRESFKPRREYQKGPIPMEGLT
TSRRDFGPHKVAPVKVHQYDQFVPSEENMDLLTTYKKDYNPYPVCRVDPIKPRDSKYPCSDKMECLPTYK
ADYLPWNQPRREPLRLEHKYQPASVRFDNRTTHQDDYPIKGLVKTISCKPLAMPKLCNIPLEDVTNYKMS
YVAHPVEKRFVHEAEKFRPCEIPFESLTTQKQSYRGLMGEPAKSLKPLARPPGLDMPFCNTTEFRDKYQA
WPMPRMFSKAPITYVPPEDRMDLLTTVQAHYTCPKGAPAQSCRPALQIKKCGRFEGSSTTKDDYKQWSSM
RTEPVKPVPQLDLPTEPLDCLTTTRAHYVPHLPINTKSCKPHWSGPRGNVPVESQTTYTISFTPKEMGRC
LASYPEPPGYTFEEVDALGHRIYKPVSQAGSQQSSHLSVDDSENPNQRELEVLA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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