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Report for CCDS64858.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64858.1 Public Homo sapiens 8 PBK 24 110 108 CCDS HistoryNCBI Gene:55872Re-query CCDS DB by CCDS ID:64858.1Re-query CCDS DB by GeneID:55872See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64858.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000522944.5 ENSP00000428489.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522944.5Link to Ensembl Protein Viewer:ENSP00000428489.1Re-query CCDS DB by Nucleotide ID:ENST00000522944Re-query CCDS DB by Protein ID:ENSP00000428489
Original member Current member NCBI NM_001278945.2 NP_001265874.1 Accepted alive Link to Nucleotide Sequence:NM_001278945.2Link to Protein Sequence:NP_001265874.1Re-query CCDS DB by Nucleotide ID:NM_001278945Re-query CCDS DB by Protein ID:NP_001265874Link to BLAST:NP_001265874.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265874.1 333 Q96KB5-2 333 100% 0 0

Chromosomal Locations for CCDS 64858.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27810305 27810501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27810958 27811167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27820565 27820694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27822319 27822488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27823063 27823205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27828105 27828198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27833056 27833113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGGAAGGGATCAGTAATTTCAAGACACCAAGCAAATTATCAGAAAAAAAGAAATCTGTATTATGTTCAA
CT
CCAACTATAAATATCCCGGCCTCTCCGTTTATGCAGAAGCTTGGCTTTGGTACTGGGGTAAATGTGTA
C
CTAATGAAAAGATCTCCAAGAGGTTTGTCTCATTCTCCTTGGGCTGTAAAAAAGATTAATCCTATATGT
AAT
GATCATTATCGAAGTGTGTATCAAAAGAGACTAATGGATGAAGCTAAGATTTTGAAAAGCCTTCATC
AT
CCAAACATTGTTGGTTATCGTGCTTTTACTGAAGCCAATGATGGCAGTCTGTGTCTTGCTATGGAATA
T
GGAGGTGAAAAGTCTCTAAATGACTTAATAGAAGAACGATATAAAGCCAGCCAAGATCCTTTTCCAGCA
GCC
ATAATTTTAAAAGTTGCTTTGAATATGGCAAGAGGGTTAAAGTATCTGCACCAAGAAAAGAAACTGC
TT
CATGGAGACATAAAGTCTTCAAATGTTGTAATTAAAGGCGATTTTGAAACAATTAAAATCTGTGATGT
A
GGAGTCTCTCTACCACTGGATGAAAATATGACTGCTCCTGCCTTCATAACCATCTTGCTTGTTTCAGTG
ACT
GACCCTGAGGCTTGTTACATTGGCACAGAGCCATGGAAACCCAAAGAAGCTGTGGAGGAGAATGGTG
TT
ATTACTGACAAGGCAGACATATTTGCCTTTGGCCTTACTTTGTGGGAAATGATGACTTTATCGATTCC
A
CACATTAATCTTTCAAATGATGATGATGATGAAGATAAAACTTTTGATGAAAGTGATTTTGATGATGAA
GCA
TACTATGCAGCGTTGGGAACTAGGCCACCTATTAATATGGAAGAACTGGATGAATCATACCAGAAAG
TA
ATTGAACTCTTCTCTGTATGCACTAATGAAGACCCTAAAGATCGTCCTTCTGCTGCACACATTGTTGA
A
GCTCTGGAAACAGATGTCTAG


Translation (333 aa):
MEGISNFKTPSKLSEKKKSVLCSTPTINIPASPFMQKLGFGTGVNVYLMKRSPRGLSHSPWAVKKINPIC
N
DHYRSVYQKRLMDEAKILKSLHHPNIV
GYRAFTEANDGSLCLAMEYGGEKSLNDLIEERYKASQDPFPA
A
IILKVALNMARGLK
YLHQEKKLLHGDIKSSNVVIKGDFETIKICDVGVSLPLDENMTAPAFITILLVSV
T
DPEACYIGTEPWKPKEAVEENGVITDKADIFAFGLTLWEMMTLSIPHINLSNDDDDE
DKTFDESDFDDE
A
YYAALGTRPPINMEELDESYQKVIELFSVCTNEDPKDRPSAAHIVEALETDV




Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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