NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS56884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56884.1 Public Mus musculus 13 Hk3 23 108 98 CCDS HistoryNCBI Gene:212032Re-query CCDS DB by CCDS ID:56884.1Re-query CCDS DB by GeneID:212032See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000123097.7 ENSMUSP00000116717.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123097.7Link to Ensembl Protein Viewer:ENSMUSP00000116717.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123097Re-query CCDS DB by Protein ID:ENSMUSP00000116717
Original member Current member NCBI NM_001206391.1 NP_001193320.1 Accepted alive Link to Nucleotide Sequence:NM_001206391.1Link to Protein Sequence:NP_001193320.1Re-query CCDS DB by Nucleotide ID:NM_001206391Re-query CCDS DB by Protein ID:NP_001193320Link to BLAST:NP_001193320.1

Chromosomal Locations for CCDS 56884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55006171 55006315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55006403 55006636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55006806 55006961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55007072 55007255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55008675 55008774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55008953 55009048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55010697 55010816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55010896 55011035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55011148 55011308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55012027 55012260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55012442 55012597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55013228 55013411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55013487 55013586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55014232 55014327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55014427 55014546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55014626 55014780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55014973 55015129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55019328 55019423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2634 nt):
ATGGCCACCATTGGGCCTTCTGGCCTGCATCCTGGAGAAAGAGCCTCAGTCTGCCCACACGAGGGCGTGC
CAAGGCCCTCAGGTAGCTTAGAACTGGAATGCTTGCAGCAATTCAAGGTGACCAGGACACAGTTGCAGCA
GATCCAAGCCAGTCTCCTGTGCTCCATGGAGCAGGCACTGAAGGGACAGGACAGTCCCGCTCCTTCTGTC
CGGATGCTGCCCACATACGTGAGGTCCACACCACACGGCACCGAGCAAGGGGATTTCCTGGTGCTGGAGC
TGGGGGCCACAGGAGCATCACTACGTGTGTTGTGGGTAACACTGACAGGCACCAAAGAATGCCGGGTGGA
GCCCAGGAGCCGGGAGTTTGTGATTCCTCAAGAGGTGATCCTAGGTGCTGGCCAGCAGCTCTTTGACTTT
GCTGCCCGATGCCTCTCTGAATTCCTGGATGCATACCCCGTGGAGAATCAGGGTCTGAAGCTTGGGTTCA
ATTTCTCTTTTCCTTGTCACCAGACAGGCTTGGACAGGAGCACCCTCATTTCCTGGACAAAAGGTTTTAG
GTGCAGCGGCGTGGAAGGCCAGGATGTGGTCCAGTTGCTAAGAGATGCCATTCAGAGGCAGGGGACCTAC
AGGATTGATGTGGTAGCCATGGTGAATGACACGGTGGGCACCATGATGGGCTGTGAGCTGGGCACCAGGC
CGTGTGAAGTCGGGCTGATTGTAGACACCGGTACCAACGCGTGCTACATGGAGGAGGCGCGGCACGTGGC
CGCTCTGGATGAGGACCGCGGCCGCACCTGTGTCAGCATCGAGTGGGGCTCCTTCTATGACGAAGATGCT
CTAGGGCCAGTACTGACCACCTTCGACTCTGCCCTGGACCGCGAGTCCCTGACTCCTGGTGCTCAAAGGT
TTGAGAAGATGATTGGAGGCCTTTACCTGGGTGAGCTGGTGAGGCTGGTTCTGGTCCACTTGACCCAGCA
CGGGGTCCTCTTTGATGGCTGCGCCTCTCCTGCGTTGCTGAGTCAAGGCTGTATCCTCCTGGACCACGTG
GCTGAGATGGAGGACACCGCCACTGGGACAGCCCGCGTCCACACCATCCTGCAGGACTTGGGTCTGAGCC
CTCGGGCCTCAGATGCTGAACTGGTGCAATATGTGTGCGTGGCTGTGTGCACACGGGCTGCCCAGCTCTG
TGCGGCTGCCCTGGCTGCAGTCCTCTCCCGCCTCCAGCACAGCAGGGAGCAGCAGACATTGCAAGTGGCT
GTGGCCACTGGAGGGCGAGTGTTTGAACGACACCCCAGGCGCATCCTGGAAGAGACCCTGGCACCATTTC
AGCTGACCTTGGAGCAGATGACAGTGGTGCAGGCACAAATGCGGGAAGCCATGATCAGGGGGCTTCAAGG
AGAGGCCTCCTCCCTCCGCATGCTGCCCACTTACGTCCGAGCGACGCCCGACGGCAGCGAGCGAGGTGAT
TTCCTGGCCTTGGACCTAGGGGGCACCAACTTCCGGGTCCTGTTGGTACGAGTGGCGGAGGGCAGTGTGC
AGATCATCAACCAGGTCTACTCCATTCCTGAGTGTAGAGCCCAGGGCTCTGGACAGAAGCTCTTTGACCA
TATTGTGGACTGCATCGTGGACTTCCAGAAGAGGCAGGGCCTTAGTGGACAGAGCCTACCCCTGGGTTTC
ACCTTCTCTTTCCCATGCAAGCAGCTTGGCCTGGACCAGGGCATCCTCCTGAATTGGACTAAGGGGTTCA
ATGCATCAGGCTGTGAGGGCCAGGATGTTGTGTATCTATTACGGGAAGCCATTAGGCGCAGACAGGCAGT
GGAGCTGAATGTGGTTGCCATTGTCAATGACACGGTGGGGACCATGATGTCCTGTGGCTATGATGATCCC
CGTTGTGAGATGGGCCTCATTGTCGGAACCGGCACCAACGCCTGTTACATGGAAGAGCTCCGCAATGTGG
CAAGTGTGCCTGGGGACTCGGGCCTCATGTGCATCAACATGGAGTGGGGTGCCTTTGGGGATGATGGCTC
ACTGGGCACACTCAGCACCCGCTTTGACACCAGTGTGGACCAGGCATCCATCAATCCAGGCAAACAGAGG
TTTGAGAAAATGATCAGCGGTATGTACTTGGGGGAGATCGTCCGCCATATCCTCCTGCACTTAACCAATC
TCGGAGTTCTCTTCCGAGGCCAGAAGACTCAATGCCTTCAGGCCAGGGACATCTTCAAGACTAAGTTCCT
CTCTGAGATCGAAAGTGATAGCCTGGCCCTGCGTCAGGTCCGAGCCATCCTGGAAGATCTGGGGCTGACT
CTGACATCTGATGACGCCTTGATGGTCCTGGAAGTGTGCCAGGCTGTGTCTCGCAGGGCTGCCCAACTCT
GTGGGGCAGGTGTGGCTGCCGTGGTGGAGAAGATTCGGGAGAACCGGGGCCTGCAGGAGCTGACAGTGTC
TGTGGGAGTAGATGGGACACTCTACAAGCTACATCCTCACTTCTCCAAGCTGGTGTCGGCAACAGTCCGG
AAGCTAGCCCCTCAGTGCACCGTCACCTTTTTGCAGTCGGAGGATGGGTCTGGCAAAGGCGCAGCTTTGG
TTACTGCTGTTGCTTGTCGCCTTACCCAGATGGCCCACGTCTGA

Translation (877 aa):
MATIGPSGLHPGERASVCPHEGVPRPSGSLELECLQQFKVTRTQLQQIQASLLCSMEQALKGQDSPAPSV
RMLPTYVRSTPHGTEQGDFLVLELGATGASLRVLWVTLTGTKECRVEPRSREFVIPQEVILGAGQQLFDF
AARCLSEFLDAYPVENQGLKLGFNFSFPCHQTGLDRSTLISWTKGFRCSGVEGQDVVQLLRDAIQRQGTY
RIDVVAMVNDTVGTMMGCELGTRPCEVGLIVDTGTNACYMEEARHVAALDEDRGRTCVSIEWGSFYDEDA
LGPVLTTFDSALDRESLTPGAQRFEKMIGGLYLGELVRLVLVHLTQHGVLFDGCASPALLSQGCILLDHV
AEMEDTATGTARVHTILQDLGLSPRASDAELVQYVCVAVCTRAAQLCAAALAAVLSRLQHSREQQTLQVA
VATGGRVFERHPRRILEETLAPFQLTLEQMTVVQAQMREAMIRGLQGEASSLRMLPTYVRATPDGSERGD
FLALDLGGTNFRVLLVRVAEGSVQIINQVYSIPECRAQGSGQKLFDHIVDCIVDFQKRQGLSGQSLPLGF
TFSFPCKQLGLDQGILLNWTKGFNASGCEGQDVVYLLREAIRRRQAVELNVVAIVNDTVGTMMSCGYDDP
RCEMGLIVGTGTNACYMEELRNVASVPGDSGLMCINMEWGAFGDDGSLGTLSTRFDTSVDQASINPGKQR
FEKMISGMYLGEIVRHILLHLTNLGVLFRGQKTQCLQARDIFKTKFLSEIESDSLALRQVRAILEDLGLT
LTSDDALMVLEVCQAVSRRAAQLCGAGVAAVVEKIRENRGLQELTVSVGVDGTLYKLHPHFSKLVSATVR
KLAPQCTVTFLQSEDGSGKGAALVTAVACRLTQMAHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH