NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55303.1 Public Homo sapiens 9 UBAP1 24 110 108 CCDS HistoryNCBI Gene:51271Re-query CCDS DB by CCDS ID:55303.1Re-query CCDS DB by GeneID:51271See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55303.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000625521.2 ENSP00000486574.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000625521.2Link to Ensembl Protein Viewer:ENSP00000486574.1Re-query CCDS DB by Nucleotide ID:ENST00000625521Re-query CCDS DB by Protein ID:ENSP00000486574
Original member Current member NCBI NM_001171201.1 NP_001164672.1 Accepted alive Link to Nucleotide Sequence:NM_001171201.1Link to Protein Sequence:NP_001164672.1Re-query CCDS DB by Nucleotide ID:NM_001171201Re-query CCDS DB by Protein ID:NP_001164672Link to BLAST:NP_001164672.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164672.1 566 Q9NZ09-4 566 100% 0 0

Chromosomal Locations for CCDS 55303.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 34179015 34179240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34234216 34234340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34241185 34242108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34249779 34249961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34250658 34250759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34251392 34251532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1701 nt):
ATGAGTGGGGCGGTGAGGGGAAGGAGGAGGGAAGTAGGACTTCAACATGGCGGCTGCGGCACTGGCGGTG
GC
TACGGTGACGGCCTGGCCCGGAGCGGGCAGAGTTGGAGGTGGTGGCGTTCGCTCTCCCTAGGGGCTGT
C
GGGAGCTCAGCGGGGACCGAGCCTGGGAGGCCGGCCGGTGCCAGCACCTTTCGGCTTCTGAGACGGCGG
CAG
CAGCGGCATTCAGGGACTTTCAGTTACCTTGATGATGTCCCATTTAAGACAGGAGACAAATTCAAAA
CA
CCAGCTAAAGTTGGTCTACCTATTGGCTTCTCCTTGCCTGATTGTTTGCAGGTTGTCAGAGAAGTACA
G
TATGACTTCTCTTTGGAAAAGAAAACCATTGAGTGGGCTGAAGAGATTAAGAAAATCGAAGAAGCCGAG
CGG
GAAGCAGAGTGCAAAATTGCGGAAGCAGAAGCTAAAGTGAATTCTAAGAGTGGCCCAGAGGGCGATA
GC
AAAATGAGCTTCTCCAAGACTCACAGTACAGCCACAATGCCACCTCCTATTAACCCCATCCTCGCCAG
C
TTGCAGCACAACAGCATCCTCACACCAACTCGGGTCAGCAGTAGTGCCACGAAACAGAAAGTTCTCAGC
CCA
CCTCACATAAAGGCGGATTTCAATCTTGCTGACTTTGAGTGTGAAGAAGACCCATTTGATAATCTGG
AG
TTAAAAACTATTGATGAGAAGGAAGAGCTGAGAAATATTCTGGTAGGAACCACTGGACCCATTATGGC
T
CAGTTATTGGACAATAACTTGCCCAGGGGAGGCTCTGGGTCTGTGTTACAGGATGAGGAGGTCCTGGCA
TCC
TTGGAACGGGCAACCCTAGATTTCAAGCCTCTTCATAAACCCAATGGCTTTATAACCTTACCACAGT
TG
GGCAACTGTGAAAAGATGTCACTGTCTTCCAAAGTGTCCCTCCCCCCTATACCTGCAGTAAGCAATAT
C
AAATCCCTGTCTTTCCCCAAACTTGACTCTGATGACAGCAATCAGAAGACAGCCAAGCTGGCGAGCACT
TTC
CATAGCACATCCTGCCTCCGCAATGGCACGTTCCAGAATTCCCTAAAGCCTTCCACCCAAAGCAGTG
CC
AGTGAGCTCAATGGGCATCACACTCTTGGGCTTTCAGCTTTGAACTTGGACAGTGGCACAGAGATGCC
A
GCCCTGACATCCTCCCAGATGCCTTCCCTCTCTGTTTTGTCTGTGTGCACAGAGGAATCATCACCTCCA
AAT
ACTGGTCCCACGGTCACCCCTCCTAATTTCTCAGTGTCACAAGTGCCCAACATGCCCAGCTGTCCCC
AG
GCCTATTCTGAACTGCAGATGCTGTCCCCCAGCGAGCGGCAGTGTGTGGAGACGGTGGTCAACATGGG
C
TACTCGTACGAGTGTGTCCTCAGAGCCATGAAGAAGAAAGGAGAGAATATTGAGCAGATTCTCGACTAT
CTC
TTTGCACATGGACAGCTTTGTGAGAAGGGCTTCGACCCTCTTTTAGTGGAAGAGGCTCTGGAAATGC
AC
CAGTGTTCAGAAGAAAAGATGATGGAGTTTCTTCAGTTAATGAGCAAATTTAAGGAGATGGGCTTTGA
G
CTGAAAGACATTAAGGAAGTTTTGCTATTACACAACAATGACCAGGACAATGCTTTGGAAGACCTCATG
GCT
CGGGCAGGAGCCAGCTGA


Translation (566 aa):
MSGAVRGRRREVGLQHGGCGTGGGYGDGLARSGQSWRWWRSLSLGAVGSSAGTEPGRPAGASTFRLLRRR
Q
QRHS
GTFSYLDDVPFKTGDKFKTPAKVGLPIGFSLPDCLQVVREVQYDFSLEKKTIEWAEEIKKIEEAE
R
EAECKIAEAEAKVNSKSGPEGDSKMSFSKTHSTATMPPPINPILASLQHNSILTPTRVSSSATKQKVLS
P
PHIKADFNLADFECEEDPFDNLELKTIDEKEELRNILVGTTGPIMAQLLDNNLPRGGSGSVLQDEEVLA
S
LERATLDFKPLHKPNGFITLPQLGNCEKMSLSSKVSLPPIPAVSNIKSLSFPKLDSDDSNQKTAKLAST
F
HSTSCLRNGTFQNSLKPSTQSSASELNGHHTLGLSALNLDSGTEMPALTSSQMPSLSVLSVCTEESSPP
N
TGPT
VTPPNFSVSQVPNMPSCPQAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDY
L
FAHGQLCEKGFDPLLVEEALEMHQCSEEK
MMEFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLM
A
RAGAS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser