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Report for CCDS54649.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54649.1 Public Homo sapiens 3 TFDP2 24 110 108 CCDS HistoryNCBI Gene:7029Re-query CCDS DB by CCDS ID:54649.1Re-query CCDS DB by GeneID:7029See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54649.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000495310.5 ENSP00000419036.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000495310.5Link to Ensembl Protein Viewer:ENSP00000419036.1Re-query CCDS DB by Nucleotide ID:ENST00000495310Re-query CCDS DB by Protein ID:ENSP00000419036
Original member Current member NCBI NM_001178141.2 NP_001171612.1 Accepted alive Link to Nucleotide Sequence:NM_001178141.2Link to Protein Sequence:NP_001171612.1Re-query CCDS DB by Nucleotide ID:NM_001178141Re-query CCDS DB by Protein ID:NP_001171612Link to BLAST:NP_001171612.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171612.1 349 Q14188-6 349 100% 0 0

Chromosomal Locations for CCDS 54649.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 141952513 141952696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141952911 141953016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141959674 141959840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141963812 141963963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141970073 141970141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141974048 141974191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141978520 141978682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 141993538 141993585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142005441 142005457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGTTGGACCCCAAATGTGATAGAAAACGGGCTAGAAAATTTATAGACTCTGATTTTTCAGAAAGTAAAC
GAAGCAAAAAAGGAGATAAAAATGGGAAAGGCTTGAGACACTTTTCAATGAAAGTGTGTGAGAAAGTTCA
ACGAAAAGGTACAACATCGTACAATGAAGTCGCTGATGAGCTGGTGTCAGAGTTCACCAATTCAAATAAC
CATTTGGCTGCTGATTCGGCTTATGATCAGAAGAACATTAGGCGAAGAGTTTATGATGCTTTAAATGTGC
TAATGGCAATGAACATAATTTCAAAGGAAAAAAAAGAAATCAAGTGGATTGGCCTGCCTACCAATTCTGC
TCAGGAATGTCAGAATCTGGAGATAGAGAAGCAGAGGCGGATAGAACGGATAAAGCAGAAGCGGGCCCAG
CTGCAAGAACTTCTCCTACAGCAAATCGCTTTCAAAAACCTGGTACAGAGAAATCGACAAAATGAGCAGC
AAAACCAGGGCCCGCCGGCTCTGAACTCTACCATTCAGCTGCCATTCATAATCATCAATACAAGCAGAAA
AACAGTCATAGATTGCAGCATCTCCAGTGACAAGTTTGAGTATCTTTTCAATTTTGACAACACCTTTGAG
ATCCATGATGACATAGAAGTACTAAAGCGGATGGGAATGTCGTTTGGCCTGGAGTCAGGCAAATGCTCTC
TGGAGGATCTGAAACTTGCGAAATCCCTGGTGCCAAAGGCTTTAGAAGGTTATATCACAGATATCTCCAC
AGGACCTTCTTGGTTAAATCAGGGACTACTTCTGAACTCTACCCAATCAGTTTCAAATTTAGACCTGACC
ACTGGTGCCACCTTACCCCAGTCAAGTGTAAACCAAGGGTTATGCTTGGATGCAGAAGTGGCCTTAGCAA
CTGGGCAGTTCCTGGCCCCAAACAGTCACCAGTCCAGCAGTGCGGCCTCTCACTGCTCCGAGTCCCGAGG
CGAGACCCCCTGTTCGTTCAATGATGAAGATGAGGAAGATGATGAGGAGGATTCCTCCTCCCCAGAATAA

Translation (349 aa):
MLDPKCDRKRARKFIDSDFSESKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNN
HLAADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQ
LQELLLQQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFE
IHDDIEVLKRMGMSFGLESGKCSLEDLKLAKSLVPKALEGYITDISTGPSWLNQGLLLNSTQSVSNLDLT
TGATLPQSSVNQGLCLDAEVALATGQFLAPNSHQSSSAASHCSESRGETPCSFNDEDEEDDEEDSSSPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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