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Report for CCDS53105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53105.1 Public Mus musculus X Irak1 23 108 98 CCDS HistoryNCBI Gene:16179Re-query CCDS DB by CCDS ID:53105.1Re-query CCDS DB by GeneID:16179See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033769.14 ENSMUSP00000033769.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033769.14Link to Ensembl Protein Viewer:ENSMUSP00000033769.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000033769Re-query CCDS DB by Protein ID:ENSMUSP00000033769
Original member Current member NCBI NM_001177973.1 NP_001171444.1 Accepted alive Link to Nucleotide Sequence:NM_001177973.1Link to Protein Sequence:NP_001171444.1Re-query CCDS DB by Nucleotide ID:NM_001177973Re-query CCDS DB by Protein ID:NP_001171444Link to BLAST:NP_001171444.1

Chromosomal Locations for CCDS 53105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 74015440 74015501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74016548 74016697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74017130 74017511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74017901 74018017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74018130 74018366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74019900 74019965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74020328 74020535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74020943 74021061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74021849 74021963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74022185 74022249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74022473 74022664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74022849 74022952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74023066 74023197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74023366 74023533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74023610 74023745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2253 nt):
ATGGCCGGGGGGCCGGGCCCCGGGGAGCCTGTGGTTCCAGGCGCCCAGCACTTCTTGTACGAGGTGCCAC
CCTGGGTTATGTGCCGCTTCTACAAAGTGATGGACGCCCTGGAGCCCGCCGACTGGTGCCAGTTCGCGGC
CTTGATCGTGCGCGACCAGACAGAGCTGCGGCTGTGCGAGCGCTCCGAGCAGCGCACAGCCAGTGTTCTG
TGGCCCTGGATCAACCGCAACGCGCGCGTAGCTGACCTCGTTCACATCCTCACGCACCTGCAGCTGCTGC
GTGCGAGGGACATCATCACAGCCTGGCACCCTCCTGCCCCCGTTGTGCCCCCAAGCACCGCTGCCCCAAG
GCCCAGCAGCATCTCTGCAGGCTCTGAGGCCGGGGACTGGAGCCCCCGGAAATTGCAGTCCTCTGCCTCC
ACCTTCCTCTCCCCAGCTTTTCCAGGCTCCCAGACCCATTCTGAGTCAGAGCTCCTCCAGGTTCCACTCC
CTGTTTCCCTCGGGCCACCACTACCATCTTCAGCCCCTTCCTCCACCAAGCAGTCAAGCCCAGAGAGCCC
AGTGTCTGGCCTCCAAAGAGCCCATCCCTCCCCGTTTTGCTGGCCCTTCTGTGAGATTTCCCAAGGCACC
TGCAACTTCTCTGAAGAACTCAGGATTGGAGAGGGTGGTTTTGGATGTGTGTACCGAGCAGTCATGAGAA
ATACTACATATGCTGTGAAGAGACTGAAGGAGGAAGCTGACCTAGAGTGGACTATGGTGAAACAGAGCTT
CTTAACAGAGGTGGAACAGCTATCAAGGTTTCGTCACCCAAATATCGTAGACTTTGCTGGCTACTGTGCA
GAGAGTGGCTTATACTGCCTTGTTTATGGCTTCTTGCCCAATGGCTCCTTGGAGGATCAGCTCCACCTTC
AGACCCAGGCCTGCTCCCCACTTTCCTGGCCTCAACGACTGGACATTCTTCTGGGCACAGCCCGGGCTAT
TCAGTTTTTACATCAGGATAGCCCCAGCCTTATCCATGGAGACATCAAGAGTTCTAACGTGCTTCTGGAT
GAGAGACTGATGCCCAAGCTGGGAGACTTTGGCCTGGCTCGTTTCAGCCGCTTTGCGGGGGCCAAAGCAA
GCCAGAGCAGTACTGTGGCCCGGACTTCCACAGTTCGAGGTACCCTCGCCTACTTGCCTGAGGAGTACAT
CAAGACAGGCCGACTGGCTGTGGACACCGATACCTTCAGCTTTGGGGTGGTAATACTGGAGACCCTTGCT
GGTCAGAGGGCTGTGAGGACACAAGGTGCAAAGACCAAGTATTTGAAAGACCTGATTGAAGATGAGGCTG
AAGAGGCTGGAGTGACCCTGAAAAGCACCCAGCCTACTCTGTGGGTGGGTGTAGCCACGGATGCTTGGGC
TGCTCCAATTGCTGCCCAGATCTATAAGAAGCACCTGGACTCCAGACCTGGGCCCTGCCCACCCCAGTTG
GGCCTGGCCCTGGCTCAACTAGCTTGCTGCTGCATGCACCGTCGGGCCAAGAAGAGGCCCCCCATGACCC
AGAGGCAAAACTCCCAACATTCCTTGCTTGCCCTTTGGCTCTATTTGGGGAGGTGCTCTGTGGAACTAAG
TGGTAAAGGGCTGCTGCTTTGCTGGATGAGCCTCAGATCCCAGGAACAGGTATACAAGAGACTAGAAGGG
CTTCAGGCAGGGCCTCCCTGGGAGCTAGAGGTTGCCGGCCATGGCTCCCCTTCCCCACAGGAGAACTCCT
ACATGTCTACCACTGGCAGTGCCCAGAGTGGGGATGAACCATGGCAGCCTCTAGTAGTGACCACAAGAGC
CCCAGCCCAGGCTGCCCAGCAACTCCAGAGAAGTCCCAACCAGCCAGTGGAAAGTGATGAGAGTGTTCCC
GGCCTCTCTGCTACCCTGCATTCCTGGCACTTGACTCCAGGTTCCCACCCAAGCCCAGCGTCCTTCAGAG
AGGCTAGCTGTACCCAGGGAGGCACTACCAGAGAATCAAGTGTGAGGAGTAGCCCAGGCTTCCAGCCTAC
AACCATGGAAGGCTCACCCACGGGCAGCTCATCCCTGCTGTCATCAGAACCACCACAGATCATCATCAAC
CCAGCCCGACAGAAGATGGTACAAAAGCTGGCTCTTTATGAAGAAGGGGTCTTGGATAGCCTGCAACTGC
TGTCATCAGGCTTTTTCCCAGGCTTGGATTTAGAACCTGAAAAGAGCCAGGGACCTGAAGAAAGTGATGA
ATTCCAGAGCTGA

Translation (750 aa):
MAGGPGPGEPVVPGAQHFLYEVPPWVMCRFYKVMDALEPADWCQFAALIVRDQTELRLCERSEQRTASVL
WPWINRNARVADLVHILTHLQLLRARDIITAWHPPAPVVPPSTAAPRPSSISAGSEAGDWSPRKLQSSAS
TFLSPAFPGSQTHSESELLQVPLPVSLGPPLPSSAPSSTKQSSPESPVSGLQRAHPSPFCWPFCEISQGT
CNFSEELRIGEGGFGCVYRAVMRNTTYAVKRLKEEADLEWTMVKQSFLTEVEQLSRFRHPNIVDFAGYCA
ESGLYCLVYGFLPNGSLEDQLHLQTQACSPLSWPQRLDILLGTARAIQFLHQDSPSLIHGDIKSSNVLLD
ERLMPKLGDFGLARFSRFAGAKASQSSTVARTSTVRGTLAYLPEEYIKTGRLAVDTDTFSFGVVILETLA
GQRAVRTQGAKTKYLKDLIEDEAEEAGVTLKSTQPTLWVGVATDAWAAPIAAQIYKKHLDSRPGPCPPQL
GLALAQLACCCMHRRAKKRPPMTQRQNSQHSLLALWLYLGRCSVELSGKGLLLCWMSLRSQEQVYKRLEG
LQAGPPWELEVAGHGSPSPQENSYMSTTGSAQSGDEPWQPLVVTTRAPAQAAQQLQRSPNQPVESDESVP
GLSATLHSWHLTPGSHPSPASFREASCTQGGTTRESSVRSSPGFQPTTMEGSPTGSSSLLSSEPPQIIIN
PARQKMVQKLALYEEGVLDSLQLLSSGFFPGLDLEPEKSQGPEESDEFQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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