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Report for CCDS5248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5248.1 Public Homo sapiens 6 TFB1M 24 110 108 CCDS HistoryNCBI Gene:51106Re-query CCDS DB by CCDS ID:5248.1Re-query CCDS DB by GeneID:51106See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5248.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367166.5 ENSP00000356134.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367166.5Link to Ensembl Protein Viewer:ENSP00000356134.4Re-query CCDS DB by Nucleotide ID:ENST00000367166Re-query CCDS DB by Protein ID:ENSP00000356134
Original member Current member NCBI NM_016020.4 NP_057104.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016020.4Link to Protein Sequence:NP_057104.2Re-query CCDS DB by Nucleotide ID:NM_016020Re-query CCDS DB by Protein ID:NP_057104Link to BLAST:NP_057104.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057104.2 346 Q8WVM0 346 100% 0 0

Chromosomal Locations for CCDS 5248.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 155257836 155258082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155260273 155260400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155285158 155285277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155296953 155297104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155298477 155298585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155311188 155311339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 155314296 155314428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGCTGCCTCCGGAAAACTCAGCACTTGCCGTCTCCCTCCGTTGCCCACGATTCGAGAAATCATTAAGT
TGTTAAGACTGCAAGCAGCGAAGCAGCTATCACAGAATTTCCTCCTGGACTTGAGGCTGACAGATAAGAT
TGTAAGGAAAGCTGGCAATCTGACAAATGCTTATGTTTACGAAGTGGGCCCTGGGCCAGGGGGAATCACA
AGATCTATTCTTAATGCCGACGTCGCTGAACTTCTGGTGGTTGAAAAGGACACTCGATTTATTCCTGGAT
TACAGATGCTTTCTGATGCAGCACCTGGGAAACTGAGAATTGTTCATGGAGATGTCTTGACATTTAAGGT
AGAAAAGGCTTTTTCAGAAAGTCTTAAAAGACCCTGGGAAGATGATCCTCCAAATGTACATATTATTGGA
AATCTGCCTTTTAGTGTTTCAACTCCACTGATTATCAAGTGGCTTGAAAATATTTCCTGTAGAGATGGAC
CTTTTGTTTATGGCAGAACTCAGATGACTTTGACTTTTCAAAAGGAAGTGGCAGAGAGACTTGCAGCCAA
TACAGGAAGCAAACAGCGTAGTCGCCTCTCTGTTATGGCTCAGTACCTCTGCAATGTTCGACACATCTTT
ACGATTCCAGGACAAGCTTTTGTCCCCAAACCAGAGGTGGACGTGGGCGTGGTGCACTTCACTCCCTTGA
TACAGCCCAAGATAGAGCAGCCATTCAAGCTGGTGGAAAAAGTGGTTCAGAATGTATTTCAGTTCCGAAG
GAAATACTGCCATCGAGGGCTCAGAATGTTATTCCCTGAAGCGCAGCGCTTGGAAAGCACGGGCAGGCTG
TTAGAGTTGGCAGACATAGACCCTACTCTTCGGCCCCGCCAGCTCTCCATCTCACACTTTAAGAGCCTCT
GTGATGTATACAGAAAAATGTGTGATGAAGACCCACAACTCTTTGCATATAATTTCAGAGAAGAACTCAA
GCGAAGAAAAAGCAAAAATGAAGAAAAAGAAGAGGATGACGCAGAGAATTACAGACTCTAG

Translation (346 aa):
MAASGKLSTCRLPPLPTIREIIKLLRLQAAKQLSQNFLLDLRLTDKIVRKAGNLTNAYVYEVGPGPGGIT
RSILNADVAELLVVEKDTRFIPGLQMLSDAAPGKLRIVHGDVLTFKVEKAFSESLKRPWEDDPPNVHIIG
NLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLAANTGSKQRSRLSVMAQYLCNVRHIF
TIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFKLVEKVVQNVFQFRRKYCHRGLRMLFPEAQRLESTGRL
LELADIDPTLRPRQLSISHFKSLCDVYRKMCDEDPQLFAYNFREELKRRKSKNEEKEEDDAENYRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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