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Report for CCDS51097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51097.1 Public Mus musculus 3 Rabggtb 23 108 98 CCDS HistoryNCBI Gene:19352Re-query CCDS DB by CCDS ID:51097.1Re-query CCDS DB by GeneID:19352See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51097.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089950.10 ENSMUSP00000087396.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089950.10Link to Ensembl Protein Viewer:ENSMUSP00000087396.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000089950Re-query CCDS DB by Protein ID:ENSMUSP00000087396
Original member Current member NCBI NM_001163478.1 NP_001156950.1 Accepted alive Link to Nucleotide Sequence:NM_001163478.1Link to Protein Sequence:NP_001156950.1Re-query CCDS DB by Nucleotide ID:NM_001163478Re-query CCDS DB by Protein ID:NP_001156950Link to BLAST:NP_001156950.1

Chromosomal Locations for CCDS 51097.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 153907601 153907741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153908055 153908204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153908790 153908915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153909349 153909459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153909546 153909598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153910261 153910366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153910691 153910888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153911925 153912032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 153912934 153912936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGGCACACAGCAGAAAGACGTTACTATCAAGTCAGATGCGCCTGACACCCTGTTGCTGGAGAAGCATG
CCGATTATATTGCTTCCTATGGCTCAAAGAAAGATGATTATGAATACTGCATGTCTGAATACCTGAGAAT
GAGCGGCGTCTATTGGGGCCTGACTGTGATGGACCTCATGGGACAGCTTCATCGCATGAACCGAGAAGAA
ATCCTGGTGTTTATCAAGTCGTGCCAGCATGAGTGTGGGGGAATAAGTGCTAGCATTGGGCACGACCCCC
ACCTTCTGTACACGCTCAGTGCTGTCCAGATTCTTACTCTGTATGACAGTGTTCATGTTATCAACGTAGA
TAAGGTCGTGGCCTATGTTCAGAGCCTACAGAAAGAAGATGGCTCCTTTGCTGGAGACATTTGGGGAGAA
ATTGATACAAGATTCTCATTTTGTGCGGTGGCAACTTTGGCTCTTTTGGGCAAGCTTGATGCTATTAATG
TGGAAAAGGCGATTGAGTTTGTTTTGTCCTGCATGAACTTTGATGGTGGATTTGGGTGCAGACCAGGCTC
TGAATCTCACGCTGGGCAGATCTATTGTTGCACAGGATTCCTGGCCATAACTAGTCAGTTGCACCAAGTG
AACTCCGACCTACTTGGTTGGTGGCTTTGTGAGCGGCAGTTGCCCTCAGGCGGACTCAATGGAAGACCCG
AGAAGTTACCAGATGTGTGCTATTCATGGTGGGTGTTGGCCTCCCTAAAGATCATCGGGAGACTTCATTG
GATTGACAGAGAAAAGCTTCGAAGTTTCATCTTAGCGTGTCAAGATGAAGAGACGGGAGGATTTGCAGAC
AGACCAGGAGATATGGTGGATCCCTTTCATACCTTATTTGGCATTGCTGGGTTGTCACTTCTGGGAGAAG
AGCAGATCAAGCCTGTTAGCCCTGTCTTCTGTATGCCAGAAGAGGTGCTTCAGAGGGTGAATGTCCAGCC
TGAGCTAGTGAGCTAG

Translation (331 aa):
MGTQQKDVTIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNREE
ILVFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSVHVINVDKVVAYVQSLQKEDGSFAGDIWGE
IDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQV
NSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFAD
RPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPEEVLQRVNVQPELVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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