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Report for CCDS50932.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50932.1 Public Mus musculus 3 Rapgef2 23 108 98 CCDS HistoryNCBI Gene:76089Re-query CCDS DB by CCDS ID:50932.1Re-query CCDS DB by GeneID:76089See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50932.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118340.6 ENSMUSP00000113778.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118340.6Link to Ensembl Protein Viewer:ENSMUSP00000113778.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118340Re-query CCDS DB by Protein ID:ENSMUSP00000113778
Original member Current member NCBI NM_001099624.3 NP_001093094.2 Accepted alive Link to Nucleotide Sequence:NM_001099624.3Link to Protein Sequence:NP_001093094.2Re-query CCDS DB by Nucleotide ID:NM_001099624Re-query CCDS DB by Protein ID:NP_001093094Link to BLAST:NP_001093094.2

Chromosomal Locations for CCDS 50932.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 79064536 79064561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79066573 79066872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79068889 79069448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79069990 79070215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79074308 79074460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79079006 79079212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79081062 79081285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79082624 79082647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79083199 79083322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79083409 79083620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79085745 79086128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79087845 79088085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79088645 79088802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79091812 79092058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79092497 79092605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79092700 79092903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79092995 79093102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79094285 79094449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79094813 79094965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79098220 79098378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79099094 79099230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79103963 79104140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79112171 79112302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 79145771 79145824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4485 nt):
ATGGCTTTCCTTGTGCGTTGCTATGCCAACTGCCTGCAGCCATGGTCCTCCAAACTCCCTGCAGACTTCA
CA
AAACTGCACCTCACTGACAGCCTGCACCCACAGGTGACCCACGTGTCCTCCAGCCATTCAGGATGTAG
C
ATCACCAGCGACTCTGGGAGCAGCAGTCTTTCTGACATTTACCAGGCCACGGAGAGCGAGGCCGGTGAC
ATG
GACCTGAGTGGACTGCCAGAGACGGCGGTTGACTCTGAGGATGACGATGATGAGGAAGACATCGAGA
GA
GCATCAGACCCTCTGATGAGCAGGGACATCGTGAGGGACTGCCTGGAGAAGGACCCGATAGACAGGAC
T
GACGATGACATCGAACAACTACTGGAATTTATGCACCAGCTGCCGGCCTTTGCCAATATGACGATGTCA
GTA
AGACGGGAGCTCTGTGCCGTGATGGTGTTTGCAGTGGTGGAAAGAGCTGGAACCATTGTGTTAAACG
AC
GGAGAAGAGCTGGATTCCTGGTCAGTGATTCTCAATGGTTCCGTGGAGGTGACATATCCGGATGGGAA
A
GCAGAAATTCTGTGCATGGGAAACAGCTTTGGTGTTTCGCCCACCATGGACAAAGAATACATGAAAGGA
GTC
ATGAGGACTAAGGTGGATGACTGCCAGTTTGTCTGCATTGCCCAGCAAGATTACTGCCGTATTTTGA
AC
CAAGTAGAAAAGAACATGCAAAAAGTTGAGGAGGAAGGAGAGATTGTAATGGTGAAGGAGCACCGAGA
A
CTTGATCGGACTGGAACAAGGAAGGGCCACATCGTCATCAAGGGCACCTCAGAGAGGCTGACCATGCAT
TTG
GTGGAAGAGCATTCTGTAGTGGATCCAACATTCATAGAAGACTTCCTGTTGACATACCGGACTTTCC
TT
TCCAGCCCGATGGAAGTGGGCAAGAAGTTATTGGAGTGGTTCAATGACCCGAGCCTCAGGGATAAGGT
G
ACGCGGGTAGTATTACTGTGGGTGAATAATCACTTCAATGACTTTGAAGGGGATCCTGCAATGACTCGA
TTT
CTGGAAGAATTTGAAAATAATCTGGAAAGAGAGAAAATGGGTGGACATCTAAGGCTGTTGAACATTG
CA
TGTGCAGCTAAAGCCAAACGAAGACTGATGACGTTAACAAAGCCTTCCCGGGAAGCCCCTCTGCCCTT
C
ATCTTACTGGGAGGCTCTGAAAAGGGCTTTGGCATCTTCGTGGACAGCGTTGACTCGTGTAGCAAAGCC
ACT
GAAGCAGGCTTGAAGCGCGGGGATCAGATATTAGAAGTGAATGGTCAAAATTTTGAAAATATCCAAC
TT
TCAAAGGCAATGGAAATTCTCAGAAATAACACACACCTGTCCATCACTGTGAAAACCAACTTATTTGT
A
TTTAAAGAACTTCTGACGAGATTGTCTGAAGAGAAAAGAAACGGTGCCCCTCACCTCCCTAAAATCGGG
GAC
ATCAAGAAGGCCAGCCGCTACTCCATACCGGATCTCGCCGTAGACGTAGAACAGGTGATAGGCCTCG
AG
AAGGTCAACAAGAAAAGCAAAGCCAACACCGTGGGAGGAAGAAACAAGCTGAAGAAAATACTCGACAA
G
ACCCGGATCAGCATCTTACCTCAGAAACCATACAATGATATTGGGATTGGTCAGTCTCAAGATGATAGC
ATC
GTAGGACTGAGGCAGACCAAGCACATCCCAGCTGCCCTGCCTGTCAGTGGAACGCTGTCCTCCAGTA
AC
CCTGACTTGCTGCAGTCACACCACCGGATTCTGGACTTCAGCACTACTCCTGACTTGCCAGATCAGGT
A
CTGAGAGTTTTCAAGGCTGACCAACAAAGCAGGTACATCATGATCAGCAAGGACACCACCGCAAAGGAA
GTG
GTCATCCAGGCCATCAGAGAGTTTGCTGTCACTGCCACCCCAGAGCAGTATTCCCTCTGTGAGGTCT
CA
GTCACACCAGAGGGAGTTATCAAACAACGCCGACTCCCAGATCAGCTTTCCAAGCTTGCCGACAGGAT
A
CAACTGAGTGGAAGGTATTATCTGAAAAACAACATGGAAACAGAAACGCTTTGCTCAGATGAAGATGCC
CAG
GAGCTGCTGCGAGAGAGCCAAATCTCCCTCCTTCAGCTCAGCACCGTGGAGGTTGCCACGCAGCTCT
CC
ATGAGGAACTTTGAACTCTTCCGCAACATTGAGCCTACTGAATACATAGATGATTTATTTAAACTCAA
A
TCAAAAACCAGCTGTGCCAACCTGAAGAAATTTGAGGAAGTCATTAACCAGGAAACATTTTGGGTGGCT
TCT
GAAATCCTGCGGGAAACAAACCAGCTGAAGAGGATGAAGATCATTAAGCATTTCATCAAGATTGCCT
TG
CACTGCAGGGAATGCAAGAATTTTAACTCCATGTTTGCAATCATCAGTGGCCTAAACCTGGCACCGGT
G
GCAAGACTACGAACCACCTGGGAAAAGCTTCCCAATAAATATGAAAAGCTGTTCCAGGACCTGCAAGAC
CTG
TTTGATCCTTCCAGAAACATGGCAAAGTACCGCAATGTCCTGAGTGGCCAGAACTTACAGCCTCCTG
TC
ATTCCCCTGTTCCCTGTCATCAAGAAGGACCTCACGTTTCTCCATGAGGGAAATGACTCAAAAGTAGA
C
GGACTGGTCAACTTTGAGAAGCTGAGGATGATTGCAAAAGAAATCCGTCACGTTGGCCGAATGGCATCA
GTC
AACATGGACCCTGCCCTTATGTTCAGGACTCGGAAGAAGAAGTGGCGGAGTCTGGGGTCCCTGAGTC
AG
GGCAGTGCAAACGCCACAGTGCTGGATGTTGCTCAGACAGGCGGGCATAAAAAGCGGGTACGCCGTAG
T
TCCTTCCTCAATGCCAAAAAGCTGTATGAAGATGCCCAGATGGCTCGGAAAGTGAAGCAATACCTGTCC
AAC
CTGGAGCTGGAGATGGATGAGGAGAGTCTTCAGACACTGTCACTGCAGTGTGAACCAGCAACCAGCA
CA
TTGCCCAAGAATCCTGGAGACAAAAAGCCTGTCAAGTCTGAGACCTCCCCAGTGGCTCCACGTGCAGG
G
CCCCAGCAGAAAGTACAGCCTCAGCAGCCGCTGGCACAGCCACAACCTCCACATAAAGTCAGCCAGGGA
CTG
CAGGTGCCCGCTGTGTCCCTCTATCCTTCACGAAAGAAGGTGCCGGTGAAGGATCTGCCTCCTTTTG
GC
ATAAACTCTCCACAAGCTTTGAAGAAAATCCTGTCCTTGTCTGAAGAAGGGAGTTTGGAGCGTCACAG
G
AAGCAAGCAGAAGATACAATATCAAATGCGTCCTCTCAGCTCTCATCGCCCCCCACCTCACCTCAGAGC
TCT
CCAAGGAAAGGTTATGCACTGGCTCTCAGTGGCACCGTGGATAATTTCTCAGATTCAGGTCACAGTG
AG
ATTTCTTCACGATCCAGTATTGTCAGCAATTCTTCTTTTGACTCGGTGCCAGTCTCTCTGCATGATGA
A
CGGCGCCAGAGGCATTCTGTCAGCATTGTGGAGAGCAACCTAGGTGTGGGCAGGATGGAGCGGCGGACC
CTG
ATGGAGCCTGATCAATACAGCTTAGGGTCGTATGCCCCAGTGTCTGAAAGCCGAGGCCTGTATGCCG
CA
GCGACGGTCATCTCTTCTCCTAGCACAGAGGAGCTTTCCCATGACCAAGGGGACCGTGCTTCCCTCGA
T
GCTGCTGACAGCGGTCGTGGGAGCTGGACATCATGCTCAAGTGGTTCCCATGACAACATACAGACCATT
CAG
CACCAGAGAAGCTGGGAAACACTGCCATTTGGGCACACTCACTTTGACTATTCAGGGGATGCTGCAA
GT
ATATGGGCCTCCGGTGGCCATATGGACCAAATGATGTTTTCTGATCATAGCACAAAATATAACAGACA
G
AATCAAAGTAGAGAGAGTCTTGAACAAGCCCAATCCCGGGCCAGCTGGGCGTCTTCCACGGGCTACTGG
GGA
GAAGACTCAGAAGGCGACACAGGCACTATCAAGCGAAGGGGTGGGAAGGATGTCTCCGCTGAGGCAG
AG
AGCAGCAGCATGGTGCCCGTGACTACAGAGGAAGCCAAACCTGTCCCTATGCCTGCCCACATAGCTGT
G
ACGCCGAGCACTACCAAGGGACTCATCGCACGGAAGGAAGGCAGGTACCGGGAGCCGCCTCCCACACCT
CCA
GGCTACGTGGGCATCCCCATTGCCGATTTCCCAGAAGGGCCTTGCCACCCGGCCAGGAAGCCCCCGG
AT
TACAACGTGGCCCTGCAGCGGTCCCGCATGGTGGCACGGCCCACTGAGGCCCCGGCACCGGGCCAGAC
G
CCGCCTGCAGCCGCAGCCAGCCGGCCGGGCAGCAAGCCACAGTGGCACAAGCCCAGCGACGCAGACCCA
CGC
CTCGCGCCCTTCCAGCCGCAGGGCTTCGCAGGAGCGGAGGAGGACGAAGATGAACAAGTGTCTGCTG
TT
TGA


Translation (1494 aa):
MAFLVRCYANCLQPWSSKLPADFTKLHLTDSLHPQVTHVSSSHSGCSITSDSGSSSLSDIYQATESEAGD
M
DLSGLPETAVDSEDDDDEEDIERASDPLMSRDIVRDCLEKDPIDRTDDDI
EQLLEFMHQLPAFANMTMS
V
RRELCAVMVFAVVERAGTIVLNDGEE
LDSWSVILNGSVEVTYPDGKAEILCMGNSFGVSPTMDKEYMKG
V
MRTKVDDCQ
FVCIAQQDYCRILNQVEKNMQKVEEEGEIVMVKEHRELDRTGTRKGHIVIKGTSERLTMH
L
VEEHSVVDPTFIEDFLLTYRTFLSSPMEVGKKLLEWFNDPSLRDK
VTRVVLLWVNNHFNDFEGDPAMTR
F
LEEFENNLERE
KMGGHLRLLNIACAAKAKRRLMTLTKPSREAPLPFILLGGSEKGFGIFVDSVDSCSKA
T
EAGLKRGDQ
ILEVNGQNFENIQLSKAMEILRNNTHLSITVKTNLFVFKELLTRLSEEKRNGAPHLPKIG
D
IKKASRYSIPDLAVDVEQVIGLEKVNKKSKANTVGGRNKLKKILDKTRISILPQKPY
NDIGIGQSQDDS
I
VGLRQTKHIPAALPVSGTLSSSNPDLLQSHHRILDFSTTP
DLPDQVLRVFKADQQSRYIMISKDTTAKE
V
VIQAIREFAVTATPEQYSLCEVSVTPEGVIKQRRLPDQLSKLADRIQLSG
RYYLKNNMETETLCSDEDA
Q
ELLRESQISLLQLSTVEVATQLSMRNFELFRNIEPTEYIDDLFKLKSKTSCANLKKFEEVINQETFWVA
S
EILRETNQLKRMKIIKHFIKIALHCRECKNFNSMFAII
SGLNLAPVARLRTTWEKLPNKYEKLFQDLQD
L
FDPSRNMAKYRNVLSGQNLQPPVIPLFPVIKKDLTFLHE
GNDSKVDGLVNFEKLRMIAKEIRHVGRMAS
V
NMDPALMFRT
RKKKWRSLGSLSQGSANATVLDVAQTGGHKKRVRRSSFLNAKKLYEDAQMARKVKQYLS
N
LELEMDEESLQTLSLQCEPATST
LPKNPGDKKPVKSETSPVAPRAGPQQKVQPQQPLAQPQPPHKVSQG
L
QVPAVSLYPSRKKVPVKDLPPF
GINSPQALKKILSLSEEGSLERHRKQAEDTISNASSQLSSPPTSPQS
S
PRK
GYALALSGTVDNFSDSGHSEISSRSSIVSNSSFDSVPVSLHDERRQRHSVSIVESNLGVGRMERRT
L
MEPDQYSL
GSYAPVSESRGLYAAATVISSPSTEELSHDQGDRASLDAADSGRGSWTSCSSGSHDNIQTI
Q
HQRSWETLPFGHTHFDYSGDAASIWASGGHMDQMMFSDHSTKYNRQNQSRESLEQAQSRASWASSTGYW
G
EDSEGDTGTIKRRGGKDVSAEAESSSMVPVTTEEAKPVPMPAHIAVTPSTTKGLI
ARKEGRYREPPPTP
P
GYVGIPIADFPEGPCHPARKPPDYNVALQRSRMVARPTEAPAPGQTPPAAAASRPGSKPQWHKPSDADP
R
LAPFQPQGFAGAEED
EDEQVSAV



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser