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Report for CCDS50857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50857.1 Public Mus musculus 2 Myt1 23 108 98 CCDS HistoryNCBI Gene:17932Re-query CCDS DB by CCDS ID:50857.1Re-query CCDS DB by GeneID:17932See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50857.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108757.8 ENSMUSP00000104388.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108757.8Link to Ensembl Protein Viewer:ENSMUSP00000104388.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108757Re-query CCDS DB by Protein ID:ENSMUSP00000104388
Original member NCBI NM_001171616.1 NP_001165087.1 Updated not alive Link to Nucleotide Sequence:NM_001171616.1Link to Protein Sequence:NP_001165087.1Re-query CCDS DB by Nucleotide ID:NM_001171616Re-query CCDS DB by Protein ID:NP_001165087
Current member NCBI NM_001171616.2 NP_001165087.1 Accepted alive Link to Nucleotide Sequence:NM_001171616.2Link to Protein Sequence:NP_001165087.1Re-query CCDS DB by Nucleotide ID:NM_001171616Re-query CCDS DB by Protein ID:NP_001165087Link to BLAST:NP_001165087.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165087.1 1089 Q8CFC2-3 1089 100% 0 0

Chromosomal Locations for CCDS 50857.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181789522 181789576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181790549 181790579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181794766 181794828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181795647 181795894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181797084 181797983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181801017 181801151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181801815 181801905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181804927 181805141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181806516 181806640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181807391 181807660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181810245 181810399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181811165 181811227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181811355 181811423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181815049 181815111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181815530 181815613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181820007 181820228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181821932 181822023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181822656 181822759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181825398 181825541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181825904 181826044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3270 nt):
ATGAGCTCAGAAAGTGATGACAAGCGAGCCCGCACACGGTCCAAGACCCTCCGAGGACCCCCAGAGACCA
CAGGTGCAGACCTCAGTTGTCCTACCCCAGGATGTACTGGTTCAGGACATGTGCGGGGCAAGTACTCCAG
ACATCGAAGCTTACAGAGTTGCCCTCTGGCCAAGAAGAGAAAACTGGAGGATGCTGAGACTGAGCACCTG
GTATCCAAGAGGAAGTCACACCCTCTGAGGCTGGCTCTGGATGAGGGTTACCGCATGGACAGTGATGGCA
GTGAGGATGCTGAAGTGAAGGACGTCTCTGTTTCAGATGAATCAGAAGGACCCCTGGAGGAGGCTGAGGC
TGAGATGTCAGGACAGGAGGAGATTCATCACCCACAGACAGCTGAAGGAAAAAGCCTCATCAAGCCCCAT
TTTGACTCCAACCCCACAAGCAGCCCTTCTGGCTTCTCCAAGAGCAGCTACAGTAGCTACCAGGGGATCA
TTGCAACTTCCCTCCTAAATCTGGGCCAAATTGCTGAAGAGGCCCTTGTGAAGGAGGATTCCGTCTCAGT
AGCTAAGTTGAGCCCCACTGTTGTTCATCAGCTTCAGGATGAGGCTGCAATGGGGGTCAACAGTGACGAG
GGTGAAAAGGACCTCTTTATACAGCCAGAAGATGTGGAGGAGGTCATTGAAGTCACAAGTGAACGTTCCC
AGGAGCCATGCCCCCAGTCTCTGAAGGATATGGTTAGTGAAGAGTCAAGTAAGCAGAAAGGAGTCCTAGG
TCATGAGGAGGAGGGAGAGGAGGAGGAAGAAGATGAAGAAGAAGAGGATGAGGAGGAGGAGGAGGAGGGA
GAGGAAGGAGAAGAAGAAGAGGAGGAGGAGGAGGAAGAAGAGGAGGAGGAAGATGAAGAGGAAGAGGAGG
AGGAGGAGGAAGCAGCTCCAAATGTTATCTTTGGGGAAGACACCTCCCATACCTCTGTCCAGAAGGCGTC
TCCTGAGTTCCGAGGCCCAGAGCTATCTAGTCCTAAACCTGAGTACTCAGTCATCGTGGAGGTTCGCTCT
GATGATGACAAGGATGAGGATTCACGCTCCCAGAAGTCAGCAGTCACAGATGAATCAGAAATGTATGACA
TGATGACCCGTGGGAATTTAGGCCTTCTGGAACAGGCCATTGCCCTGAAGGCTGAGCAGGTGCGAGCGGT
CTGTGAGTCTGGCTGTCCACCTGCTGAGCAGGGCCATCTGGGCCCAGGAGAGCCAGGGAAAATGGCAAAG
CCCCTGGACGTGGTGAGGAAGAGCTGCTACAGCAAAGATCCTTCCAGGGTGGAGAAGCGTGAAATCAAGT
GTCCGACACCTGGCTGTGATGGCACTGGCCATGTTACTGGATTGTACCCTCATCACCGCAGCCTGTCTGG
CTGTCCCCACAAGGATAGAATCCCTCCAGAGATCTTGGCCATGCATGAAAATGTACTGAAGTGCCCTACT
CCTGGCTGCACGGGCCAAGGCCATGTGAACAGCAACCGCAATACTCACAGAAGGCCCATGTGTTTTGTGA
AGCAGCTTGAGGTTCCACCTTATGGGAGCTACAGACCCAATGTGGCTCCCGCCACGCCCAGGGCCAACTT
GGCCAAGGAGCTGGAGAAGTTCTCCAAAGTCACCTTTGACTACGCAAGTTTTGATGCTCAGGTTTTTGGC
AAACGTATGCTTGCCCCAAAGATTCAGACCAGCGAAACCTCACCCAAAGCCTTCCAATGCTTCGATTACT
CTCATGATGCTGAGGCTGCACACATGGCTGCCACAGCCATCCTGAACCTCTCCACTCGATGTTGGGAGAT
GCCAGAGAACCTCAGCACAAAGCCACAGGACCTCCCCAGCAAGGCTGTGGACATTGAGGTAGATGAAAAT
GGAACTCTGGACTTGAGCATGCATAAACATCGCAAGCGGGAAAACACTTTCCCCAGCAGTAGCAGCTGCA
GTAGCAGCCCTGGTGTCAAGTCTCCTGATGTCTCTCAACGTCAGAGCAGTACCAGTGCCCCCAGCAGCTC
TATGACCTCACCCCAGTCCAGCCAGGCCTCTCGCCAGGATGAGTGGGACCGTCCTCTAGACTACACCAAA
CCTAGTCGGCTTCGAGAGGAAGAGCCTGAGGAGTCAGAGCCAGCAGCACACTCTTTTGCTTCTTCTGAAG
CAGATGATCAGGAGGTGTCAGAAGAGAACTTTGAGGAGCGGAAGTATCCAGGGGAAGTCACCCTAACCAA
CTTTAAGCTGAAGTTTCTTTCCAAGGACATAAAGAAGGAACTTCTCACCTGTCCCACCCCCGGCTGTGAC
GGCAGTGGCCATATCACCGGGAACTATGCCTCCCATCGCAGCCTCTCTGGTTGCCCTCTTGCTGACAAGA
GCCTCAGAAACCTCATGGCTGCCCACTCTGCTGACCTCAAGTGCCCCACACCTGGCTGTGATGGCTCTGG
CCACATAACAGGGAACTATGCTTCACACCGGAGTTTGTCAGGCTGCCCACGTGCCAAGAAGAGTGGACTC
AAGGTGGCGCCTACCAAGGATGACAAGGAGGACCCCGAGTTGATGAAGTGCCCAGTTCCAGGCTGTGTGG
GGCTCGGCCACATCAGCGGCAAATATGCCTCTCACAGGAGTGCTTCTGGCTGCCCACTGGCTGCTCGGAG
GCAGAAAGAGGGAGCTCTCAATGGTTCATCTTTCTCGTGGAAGTCGCTGAAGAATGAGGGCCCTACTTGC
CCCACCCCAGGTTGCGACGGCTCTGGCCATGCCAACGGCAGTTTCCTCACCCACCGAAGTTTGTCTGGCT
GTCCCAGAGCAACCTTTGCTGGAAAGAAAGGAAAACTCTCAGGGGATGAGATTCTCAGCCCAAAGTTCAA
GACAAGTGATGTGCTGGAGAATGATGAGGAGATCAAGCAGCTAAATCAGGAGATACGAGACTTAAATGAG
TCCAATTCGGAAATGGAGGCTGCCATGGTGCAGCTGCAGTCTCAGATCTCGTCCATGGAGAAGAACCTGA
AGAACATCGAGGAGGAGAACAAGCTCATTGAGGAGCAGAATGAGGCCCTGTTTCTGGAATTGTCCGGGCT
TAGCCAAGCCCTCATCCAAAGTCTTGCCAATATTCGCCTTCCACACATGGAACCAATATGTGAACAGAAT
TTTGACGCCTATGTGAACACCCTCACTGACATGTACTCCAATCAGGACTGCTACCAGAATCCGGAGAACA
AAGGCCTTCTGGAAACGATCAAGCAAGCTGTGAGGGGCATTCAGGTCTAG

Translation (1089 aa):
MSSESDDKRARTRSKTLRGPPETTGADLSCPTPGCTGSGHVRGKYSRHRSLQSCPLAKKRKLEDAETEHL
VSKRKSHPLRLALDEGYRMDSDGSEDAEVKDVSVSDESEGPLEEAEAEMSGQEEIHHPQTAEGKSLIKPH
FDSNPTSSPSGFSKSSYSSYQGIIATSLLNLGQIAEEALVKEDSVSVAKLSPTVVHQLQDEAAMGVNSDE
GEKDLFIQPEDVEEVIEVTSERSQEPCPQSLKDMVSEESSKQKGVLGHEEEGEEEEEDEEEEDEEEEEEG
EEGEEEEEEEEEEEEEEDEEEEEEEEEAAPNVIFGEDTSHTSVQKASPEFRGPELSSPKPEYSVIVEVRS
DDDKDEDSRSQKSAVTDESEMYDMMTRGNLGLLEQAIALKAEQVRAVCESGCPPAEQGHLGPGEPGKMAK
PLDVVRKSCYSKDPSRVEKREIKCPTPGCDGTGHVTGLYPHHRSLSGCPHKDRIPPEILAMHENVLKCPT
PGCTGQGHVNSNRNTHRRPMCFVKQLEVPPYGSYRPNVAPATPRANLAKELEKFSKVTFDYASFDAQVFG
KRMLAPKIQTSETSPKAFQCFDYSHDAEAAHMAATAILNLSTRCWEMPENLSTKPQDLPSKAVDIEVDEN
GTLDLSMHKHRKRENTFPSSSSCSSSPGVKSPDVSQRQSSTSAPSSSMTSPQSSQASRQDEWDRPLDYTK
PSRLREEEPEESEPAAHSFASSEADDQEVSEENFEERKYPGEVTLTNFKLKFLSKDIKKELLTCPTPGCD
GSGHITGNYASHRSLSGCPLADKSLRNLMAAHSADLKCPTPGCDGSGHITGNYASHRSLSGCPRAKKSGL
KVAPTKDDKEDPELMKCPVPGCVGLGHISGKYASHRSASGCPLAARRQKEGALNGSSFSWKSLKNEGPTC
PTPGCDGSGHANGSFLTHRSLSGCPRATFAGKKGKLSGDEILSPKFKTSDVLENDEEIKQLNQEIRDLNE
SNSEMEAAMVQLQSQISSMEKNLKNIEEENKLIEEQNEALFLELSGLSQALIQSLANIRLPHMEPICEQN
FDAYVNTLTDMYSNQDCYQNPENKGLLETIKQAVRGIQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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