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Report for CCDS5074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5074.1 Public Homo sapiens 6 PPIL6 24 110 108 CCDS HistoryNCBI Gene:285755Re-query CCDS DB by CCDS ID:5074.1Re-query CCDS DB by GeneID:285755See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5074.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000521072.7 ENSP00000427929.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000521072.7Link to Ensembl Protein Viewer:ENSP00000427929.1Re-query CCDS DB by Nucleotide ID:ENST00000521072Re-query CCDS DB by Protein ID:ENSP00000427929
Original member Current member NCBI NM_173672.5 NP_775943.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173672.5Link to Protein Sequence:NP_775943.1Re-query CCDS DB by Nucleotide ID:NM_173672Re-query CCDS DB by Protein ID:NP_775943Link to BLAST:NP_775943.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775943.1 311 Q8IXY8-1 311 100% 0 0

Chromosomal Locations for CCDS 5074.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 109392826 109392937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109400035 109400170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109419187 109419243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109426847 109426994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109427094 109427156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109431157 109431345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109436104 109436199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109440456 109440590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGCAAGGCCGCAGCCGTGCGGGCCCCCGCACGCTAGGTGCGGCTCGCCGTCGCTGCCGGAGCGGCCGC
TGCAGGTGAAGGTGGTGGGGCTCTTCAGCTGCCCCAACTTTCAGATTGCGAAGAGCGCCGCTGAGAATCT
GAAGAATAATCATCCATCCAAATTTGAAGATCCTATATTAGTTCCTCTTCAAGAATTTGCATGGCATCAA
TATCTACAGGAGAAAAAAAGGGAACTCAAAAATGAAACCTGGGAATATTCTTCCTCTGTGATTTCTTTTG
TTAATGGTCAGTTTCTGGGTGATGCATTGGATCTGCAGAAATGGGCCCACGAGGTGTGGGATATAGTTGA
CATTAAACCCTCTGCACTTTATGACGCACTCACTGAGGATTTTTCCGCTAAGTTCTTAAGAGACACCAAG
CATGATTTCGTGTTTTTGGACATTTGTATTGATTCTTCTCCAATTGGAAGATTGATTTTTGAGCTATACT
GTGATGTGTGTCCCAAAACATGTAAAAATTTTCAGGTCTTGTGCACAGGAAAAGCAGGGTTTTCTCAACG
TGGCATAAGACTACATTACAAAAATTCCATTTTTCATCGAATAGTACAGAATGGCTGGATACAAGGAGGG
GATATAGTGTATGGAAAAGGAGATAATGGAGAGTCGATTTATGGTCCAACATTTGAAGATGAAAACTTTT
CAGTTCCTCATAATAAAAGAGGAGTACTTGGAATGGCCAACAAAGGCCGTCACAGCAACGGGTCACAATT
CTATATCACACTGCAAGCAACTCCTTATCTAGATAGAAAATTTGTGGCTTTTGGGCAACTGATTGAAGGA
ACAGAAGTGCTTAAACAACTAGAATTAGTTCCAACACAGAATGAAAGACCAATACATATGTGTAGAATTA
CTGACAGTGGAGATCCTTATGCTTGA

Translation (311 aa):
MARPQPCGPPHARCGSPSLPERPLQVKVVGLFSCPNFQIAKSAAENLKNNHPSKFEDPILVPLQEFAWHQ
YLQEKKRELKNETWEYSSSVISFVNGQFLGDALDLQKWAHEVWDIVDIKPSALYDALTEDFSAKFLRDTK
HDFVFLDICIDSSPIGRLIFELYCDVCPKTCKNFQVLCTGKAGFSQRGIRLHYKNSIFHRIVQNGWIQGG
DIVYGKGDNGESIYGPTFEDENFSVPHNKRGVLGMANKGRHSNGSQFYITLQATPYLDRKFVAFGQLIEG
TEVLKQLELVPTQNERPIHMCRITDSGDPYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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