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Report for CCDS50278.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50278.1 Public Mus musculus 18 Ythdc2 23 108 98 CCDS HistoryNCBI Gene:240255Re-query CCDS DB by CCDS ID:50278.1Re-query CCDS DB by GeneID:240255See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50278.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037763.10 ENSMUSP00000048340.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037763.10Link to Ensembl Protein Viewer:ENSMUSP00000048340.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037763Re-query CCDS DB by Protein ID:ENSMUSP00000048340
Original member NCBI NM_001163013.1 NP_001156485.1 Updated not alive Link to Nucleotide Sequence:NM_001163013.1Link to Protein Sequence:NP_001156485.1Re-query CCDS DB by Nucleotide ID:NM_001163013Re-query CCDS DB by Protein ID:NP_001156485
Current member NCBI NM_001163013.2 NP_001156485.1 Accepted alive Link to Nucleotide Sequence:NM_001163013.2Link to Protein Sequence:NP_001156485.1Re-query CCDS DB by Nucleotide ID:NM_001163013Re-query CCDS DB by Protein ID:NP_001156485Link to BLAST:NP_001156485.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156485.1 1445 B2RR83 1445 100% 0 0

Chromosomal Locations for CCDS 50278.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 44828687 44828918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44830152 44830242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44833022 44833218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44834459 44834658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44837341 44837507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44840185 44840287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44841263 44841419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44844286 44844393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44845680 44845828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44847744 44847879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44850308 44850434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44850636 44850701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44854603 44854781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44854992 44855088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44855171 44855258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44855344 44855424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44857009 44857091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44858188 44858293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44859931 44860050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44860377 44860649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44862605 44862731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44864265 44864470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44864861 44865056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44871450 44871559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44872841 44873133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44877618 44877795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44885123 44885326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44886240 44886422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 44887608 44887688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4338 nt):
ATGTCCAGGCCGAGCAGCGTCTCGCCGCGTCCGCCGGCTCCTAGCGGAGGCGGCACGGGCGGCGGTGGAG
GTGGCAGTGGCGGCGGCGGTGGCGGTGGCGGCGGCGGCCCAGCTTCGTGTGGTCCTGGAGGCGGTGGCCG
GGCCAAGGGCCTCAAAGACATTCGTATCGACGAGGAGGTGAAGATCGCCGTCAACATCGCTCTGGAGCGC
TTCCGCTACGGTGACCAGAGAGAAATGGAATTCCCTTCTTCTTTGACCAGTACGGAAAGAGCCTTTATTC
ACCGACTAAGTCAATCTCTTGGTTTAGTTTCTAAAAGTAAAGGAAAGGGAGCAAATAGATACCTAACTGT
GAAGAAGAAAGATGGATCAGAAACAGCTCATGCAATGATGACCTGTAATTTGACTCATAACACAAAACAT
GCTGTTAGGAGCCTAATTCAGAGATTTCCTGTCACCAATAAAGAACGTACTGAACTCCTACCTAAAACAG
AAAGAGGAAATGTGTTTGCAGTTGAAGCTGAAAACCGAGAAATGAGCAAGACAAGCGGGCGACTCAACAA
TGGCATTCCTCAAGTTCCTGTGAAAAGGGGAGAGTCTGAATTTGACTCATTCAGGCAGTCTTTACCAGTT
TTTGAGAAACAAGAAGAAATTGTTAAAATAATTAAGGAAAATAAAGTAGTTTTGATAGTAGGAGAAACTG
GGTCTGGAAAGACCACACAGATTCCTCAGTTCCTGTTAGATGATTGCTTTAAAAATGGCATCCCCTGCCG
AATATTTTGTACTCAACCAAGACGACTAGCAGCGATTGCTGTGGCTGAAAGAGTTGCTGCAGAGAGAAGA
GAAAGAATTGGTCAAACAATTGGTTATCAGATCCGATTAGAAAGCAGGGTTTCGCCAAAGACACTTCTGA
CATTTTGCACTAATGGGGTATTGCTTCGTACATTGATGGCAGGTGATAGCACATTGTCAACTGTGACCCA
TGTTATTGTGGATGAAGTGCATGAAAGGGATCGATTCAGTGATTTTTTGCTTACTAAGTTAAGAGATTTG
TTGCAAAAGCACCCAACTTTGAAACTAATTCTTTCGAGTGCTGCCTTGGATGTGAACCTCTTCATAAGAT
ATTTTGGAAGTTGTCCAGTGATATATATACAGGGAAGACCATTTGAAGTAAAAGAAATGTTTCTGGAAGA
TATTTTAAGAACTACAGGATATACCAACAAAGAAATGTTAAAGTACAAAAAGGAAAAGCAACGAGAGGAG
AAACAACAGACCACCCTCACAGAGTGGTACTCAGCTCAAGAGAATACCTTCAAGCCTGAGTCTCAGAGGC
AGAGAGCTGTTGCTAGTGTGTCTGAAGAGTATGACTTATTGGATGATGGAGGTGATGCTGTCTTCAGTCA
GCTGACAGAAAAAGATGTGAATTGCCTTGAACCATGGTTAATCAAGGAGATGGATGCCTGCCTTTCTGAC
ATATGGCTGCATAAAGATGTTGATGCTTTTGCTCAGGTCTTTCATCTTATTTTAACTGAAAATGTTAGTG
TTGATTATAGGCATAGTGAGACCAGTGCAACAGCTCTGATGGTTGCTGCAGGACGGGGCTTTACGAGCCA
AGTAGAGCAGTTAATTAGTATGGGAGCCAATGTCCACAGTAAAGCATCAAATGGCTGGATGGCTTTAGAT
TGGGCTAAGCACTTTGGACAGACTGAAATTGTGGATCTTCTAGAATCTTACAGTGCTTCATTGGAATTTG
GAAATCTAGATGAAAGTTCCTTGGTTCAGACAAATGGGAATGACCTCAGTGCAGAAGACAGAGAGCTGTT
GAAAGCTTACCATCATAGTTTTGATGATGAGAAAGTAGACTTGGATTTGATCATGCATCTCCTATATAAT
ATCTGCCATAGCTGTGATGCTGGTGCAATATTAATTTTTCTACCTGGATATGATGAAATTGTTGGTTTGA
GGGATCGTATCCTCTTTGATGACAAGCGGTTTGCTGACAATACACATAGGTATCAAGTCTTTATGCTTCA
TTCAAATATGCAGACATCTGATCAAAAGAAGGTATTAAAAAATCCACCTGCAGGTGTCCGAAAAATAATC
CTTTCCACCAATATTGCTGAGACGAGCATCACTGTCAATGATGTTGTGTTTGTTATTGATTCTGGTAAGG
TGAAAGAGAAATCCTTTGATGCACTGAATTTTGTTACAATGTTAAAAATGGTATGGATTTCCAAAGCTAG
TGCAATACAGCGCAAAGGCAGAGCGGGACGGTGTAGACCTGGAATTTGTTTCCGTCTGTTTAGTAGACTT
CGATTTCAGAACATGCTGGAATTTCAGACGCCAGAACTCTTGAGAATGCCATTGCAGGAACTTTGTTTAC
ATACCAAGCTGTTAGCCCCAGTTAACTGCACCATTGCCGACTTCCTTATGAAAGCCCCTGAACCGCCTCC
AGCTTTAATTGTGAGAAATGCTGTGCAGATGCTTAAGACAATAGATGCAATGGATGCATGGGAAGATCTG
ACTGAACTTGGGTATCATTTGGCTGATTTGCCAGTAGAACCGCATCTTGGGAAAATGGTCCTGTGTGCAG
TGGTTTTGAAGTGTCTGGACCCCATCCTTACAATTGCCTGCACGCTCGCTTACCGTGACCCTTTTGTCCT
GCCTACCCAGGCCTCTCAGAAACGGGCAGCTATGCTTTGTAGGAAACGCTTCACTGCAGGGACTTTCAGT
GACCACATGGCACTTCTGAGAGCATTTCAGGCATGGCAGAAAGCACGAAGTGATGGGTGGGAGCGAGCCT
TTTGTGAAAAGAATTTTCTTTCACAAGCTACTATGGAAATCATTATAGGCATGAGAACACAGTTGCTTGG
TCAGCTTAGAGCATCAGGTTTTGTTAGAGCACGAGGTGGTGGTGACATTCGAGATGTTAATACAAACTCC
GAGAACTGGGCTGTTGTTAAAGCTGCATTGGTAGCAGGCATGTATCCTAATTTAGTCCACGTGGACAGAG
AGAATGTAATATTGACAGGGCCAAAGGAAAAGAAAGTACGCTTTCATCCCACTTCAGTTCTCAGTCAACC
TCAATACAAAAAGATTCCTCCCGCCAATGGTCAGGCTGCAGCGATTCAGGCATTGCCCACAGATTGGCTT
ATTTATGATGAAATGACCAGAGCCCATCGAATTGCTAATATCAGATGTTGTTCAGCAGTGACACCTGTTA
CTGTCCTGGTGTTCTGTGGACCAGCAAGACTGGCAAGTAACGCTCTTCAGGAACCTTCATCCTTTAGAGC
GGATGGTATTCCCAATGACAGCAGTGACAGTGAGATGGAAGACAGAACTACTGCCAATTTGGCTGCTTTG
AAGCTTGATGAATGGCTTAACTTCAAACTAGAGCCAGAGGCTGCCAGTTTATTGCTACAGCTCAGACAGA
AGTGGCATAGTTTGTTTTTACGCCGAATGAGAGCGCCATCTAAACCTTGGTCTCAAGTCGATGAAGCTAC
CATACGAGCAATTATAGCTGTTTTAAGCACTGAAGAACAGTCTGCAGGTTTACAGCAGCCATCTGGAATT
GGCCAGCGGCCAAGACCCATGTCTTCAGAAGAACTTCCTTTGGCTTCATCTTGGAGATCCAATAATAGTA
GGAAAAGTACAGCTGACACTGAGTTTGCGGATGGATCTACTACTGGAGAAAGAGTACTGATGAAATCTCC
ATCTCCAGCCTTACATCCACCTCAGAAGTACAAAGATAGAGGAATTTTACATCCTAAGCGGAGCACCGAT
GACCGGTCCGATCAATCATCTGTGAAATCCACAGACAGCAGCAGTTACCCAAGTCCTTGTGCCAGCCCCT
CTCCTCCATCCTCAGGGAAGGGATCAAAATCTCCTTCACCAAGACCAAACATGCCTATTCGTTACTTCAT
AATGAAGAGTAGCAATCTGAGAAACCTTGAAATTTCTCAACAGAAGGGTATCTGGTCTACAACCCCTAGT
AATGAGCGGAAGCTAAATCGAGCGTTTTGGGAGAGCAGCATGGTTTACTTGGTATTTTCTGTTCAAGGAT
CTGGACATTTCCAGGGATTTTCTAGGATGTCTTCTGAGATAGGAAGGGAGAAGAGCCAGGACTGGGGGTC
AGCTGGACTAGGTGGAGTATTTAAAGTGGAGTGGATACGCAAAGAAAGCCTTCCCTTTCAGTTTGCACAC
CATTTACTCAATCCTTGGAACGACAACAAGAAAGTACAGATAAGCAGAGATGGGCAGGAGCTAGAACCTC
AGGTTGGGGAACAGTTGCTCCAGTTATGGGAACGCCTTCCATTGGGAGAAAAAACAACTTCTGATTGA

Translation (1445 aa):
MSRPSSVSPRPPAPSGGGTGGGGGGSGGGGGGGGGGPASCGPGGGGRAKGLKDIRIDEEVKIAVNIALER
FRYGDQREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLTHNTKH
AVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQVPVKRGESEFDSFRQSLPV
FEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPCRIFCTQPRRLAAIAVAERVAAERR
ERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDL
LQKHPTLKLILSSAALDVNLFIRYFGSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREE
KQQTTLTEWYSAQENTFKPESQRQRAVASVSEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSD
IWLHKDVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFTSQVEQLISMGANVHSKASNGWMALD
WAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGNDLSAEDRELLKAYHHSFDDEKVDLDLIMHLLYN
ICHSCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFMLHSNMQTSDQKKVLKNPPAGVRKII
LSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRL
RFQNMLEFQTPELLRMPLQELCLHTKLLAPVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDL
TELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFS
DHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNS
ENWAVVKAALVAGMYPNLVHVDRENVILTGPKEKKVRFHPTSVLSQPQYKKIPPANGQAAAIQALPTDWL
IYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSFRADGIPNDSSDSEMEDRTTANLAAL
KLDEWLNFKLEPEAASLLLQLRQKWHSLFLRRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGI
GQRPRPMSSEELPLASSWRSNNSRKSTADTEFADGSTTGERVLMKSPSPALHPPQKYKDRGILHPKRSTD
DRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPS
NERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPFQFAH
HLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKTTSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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