NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50027.1 Public Mus musculus 17 Mapk8ip3 23 108 98 CCDS HistoryNCBI Gene:30957Re-query CCDS DB by CCDS ID:50027.1Re-query CCDS DB by GeneID:30957See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50027.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121787.7 ENSMUSP00000113753.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121787.7Link to Ensembl Protein Viewer:ENSMUSP00000113753.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121787Re-query CCDS DB by Protein ID:ENSMUSP00000113753
Original member Current member NCBI NM_001163453.1 NP_001156925.1 Accepted alive Link to Nucleotide Sequence:NM_001163453.1Link to Protein Sequence:NP_001156925.1Re-query CCDS DB by Nucleotide ID:NM_001163453Re-query CCDS DB by Protein ID:NP_001156925Link to BLAST:NP_001156925.1

Chromosomal Locations for CCDS 50027.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24898948 24899069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24899145 24899294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24899396 24899575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24899675 24899713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24899836 24899949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24900162 24900333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24900498 24900646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24900788 24900855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24900939 24901019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24901106 24901225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24901340 24901529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24901605 24901787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24902278 24902443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24903004 24903162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24903289 24903384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24903925 24904051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24904649 24904819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24904907 24904963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24905168 24905298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24906147 24906228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24906809 24906961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24907329 24907386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24909150 24909161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24912748 24912866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24913530 24913632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24914459 24914705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24918088 24918139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24923816 24923907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24924147 24924217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24927829 24927949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24936537 24936854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3903 nt):
ATGATGGAGATCCAGATGGACGAGGGAGGAGGAGTGGTGGTGTACCAAGACGACTACTGCTCGGGCTCGG
TCATGTCGGAGCGTGTGTCGGGCCTGGCGGGCTCCATCTACCGCGAGTTCGAGCGCCTCATTCACTGCTA
TGACGAGGAGGTGGTCAAGGAGCTCATGCCGCTGGTGGTGAACGTGCTGGAGAACCTTGACTCGGTGCTG
AGCGAGAACCAGGAGCACGAGGTGGAGCTGGAGCTCCTACGCGAGGACAACGAGCAGCTGCTCACGCAAT
ACGAGCGCGAGAAGGCGCTGCGCAAACAGGCCGAGGAGAAATTCATCGAATTTGAAGATGCCTTGGAACA
AGAGAAGAAAGAACTCCAGATCCAGGTAGAACATTATGAGTTTCAGACACGCCAGCTGGAGCTAAAGGCC
AAAAACTATGCAGATCAGATTTCCCGACTGGAGGAACGAGAATCGGAGATGAAGAAGGAATACAATGCCC
TGCACCAGCGGCACACAGAGATGATCCAGACCTATGTGGAACACATTGAAAGATCCAAGATGCAGCAAGT
TGGGGGTAGCGGCCAAACAGAAAGCAGCCTGCCCGGGCGGAGCAGGAAGGAGCGTCCCACCTCTCTGAAT
GTCTTCCCCCTGGCTGATGGCATGTGTCCAAATGATGAGATGTCTGAGTCAGGCCAGTCCTCAGCAGCTG
CAACACCCAGTACCACAGGTACCAAGTCCAACACACCCACGTCCTCCGTGCCCTCAGCAGCAGTCACGCC
ACTCAACGAGAGCCTACAGCCCCTGGGGGACTATGTCAGTGTCACAAAGAACAACAAGCAGGCCCGAGAG
AAGCGCAATAGCCGTAACATGGAGGTCCAGGTCACCCAAGAGATGCGGAACGTCAGTATCGGCATGGGCA
GCAGTGACGAGTGGTCCGATGTTCAGGACATTATCGACTCCACCCCAGAGCTGGATGTGTGTCCTGAAAC
CCGTCTGGAGCGCACAGGAAGCAGCCCAACCCAGGGAATTGTAAACAAAGCTTTTGGAATCAACACTGAC
TCCTTGTATCACGAACTCTCCACGGCGGGATCTGAGGTCATCGGGGATGTGGACGAGGGAGCTGATCTCC
TAGGGGAGTTTTCAGGAATGGGCAAAGAAGTGGGGAACCTGCTGCTGGAGAACTCACAGCTTCTAGAGAC
AAAAAATGCTTTAAATGTAGTGAAGAATGACCTCATTGCTAAGGTTGACCAACTGTCAGGAGAACAGGAG
GTCCTGAAGGGTGAGCTGGAAGCAGCCAAGCAAGCCAAAGTCAAGCTGGAGAACCGAATCAAAGAGCTTG
AAGAAGAACTGAAGAGAGTCAAGTCAGAGGCAGTAACTGCCCGCCGTGAGCCCAGAGAAGAGGTGGAGGA
TGTAAGCAGCTATCTCTGTACAGAATTGGACAAAATCCCCATGGCCCAGCGCCGACGCTTCACACGGGTG
GAGATGGCCCGAGTGCTCATGGAACGCAACCAGTACAAGGAACGCCTCATGGAGCTGCAGGAGGCTGTGA
GGTGGACTGAAATGATCAGAGCATCAAGGGAACACCCATCTGTCCAGGAGAAGAAGAAGTCCACCATCTG
GCAGTTCTTTAGTCGCCTCTTCAGCTCCTCATCTAGCCCCCCTCCGGCCAAACGATCCTACCCATCTGTG
AACATTCACTACAAGTCACCCACTGCAGCTGGCTTTAGCCAGCGTCGCAGCCATGCTTTGTGCCAGATCT
CAGCCGGCAGCAGGCCCCTGGAGTTCTTCCCTGATGATGACTGCACCTCTTCTGCCCGGCGGGAGCAGAA
GCGGGAGCAGTACCGCCAGGTTCGTGAACACGTGCGCAATGATGACGGGAGGCTGCAGGCCTGTGGGTGG
AGCCTGCCTGCCAAGTACAAGCAGCTGAGCCCCAATGGAGGCCAGGAAGACACCCGGATGAAAAATGTGC
CTGTCCCTGTGTACTGCCGCCCTCTGGTGGAGAAGGACCCTTCGACAAAGCTGTGGTGTGCTGCTGGTGT
CAACCTGAGTGGGTGGAAGCCACATGAAGAGGACTCTAGCAATGGACCCAAGCCTGTACCAGGTCGAGAC
CCTCTGACCTGTGACCGGGAAGGAGAAGGCGAACCCAAGAGCACACACCCATCACCTGAGAAGAAGAAGG
CAAAGGAAACCCCTGAGGCAGATGCTACCTCCAGTCGGGTATGGATCCTCACCAGCACCCTGACAACCAG
CAAGGTGGTGATCATTGATGCCAACCAGCCAGGCACAATTGTGGATCAGTTCACAGTCTGCAATGCCCAC
GTCCTGTGTATCTCCAGCATTCCTGCGGCCAGTGACAGTGACTATCCCCCTGGGGAGATGTTCCTAGACA
GTGATGTGAACCCTGAAGATTCAGGTGCTGATGGTGTGCTGGCTGGCATCACCCTGGTGGGGTGTGCTAC
CCGCTGCAATGTTCCACGTAGCAACTGTTCCTCACGAGGAGACACCCCAGTACTGGACAAGGGGCAGGGG
GATGTGGCGACCACTGCCAATGGGAAGGTCAACCCGTCCCAATCCACAGAAGAAGCCACAGAAGCCACGG
AGGTGCCAGACCCTGGTCCCAGCGAGTCAGAAGCAACGACAGTCCGGCCCGGGCCTCTCACAGAGCATGT
CTTTACTGACCCAGCACCCACCCCATCCTCCAGCACCCAGCCTGCCAGTGAGAATGGGTCAGAGTCCAAT
GGCACCATTGTACAGCCTCAGGTGGAGCCCAGTGGGGAACTCTCAACAACAACCAGTAGCGCTGCACCCA
CTATGTGGCTAGGAGCCCAGAATGGCTGGCTCTATGTGCATTCAGCGGTAGCCAACTGGAAGAAGTGTCT
GCACTCCATCAAGCTAAAAGACTCTGTGCTGAGCCTGGTGCATGTCAAAGGCCGAGTGCTGGTAGCTCTT
GCAGATGGGACCCTGGCTATCTTCCATCGTGGAGAGGATGGCCAGTGGGACCTGAGCAACTACCACCTAA
TGGACCTGGGCCACCCACACCACTCCATCCGCTGCATGGCTGTTGTGAATGACCGAGTTTGGTGTGGCTA
CAAGAACAAGGTGCATGTTATCCAGCCCAAGACAATGCAGATTGAGAAATCATTTGATGCCCACCCAAGG
CGGGAAAGCCAGGTACGTCAGCTGGCCTGGATCGGTGATGGAGTGTGGGTCTCTATTCGCTTGGATTCTA
CCCTTCGGCTCTACCATGCTCACACCCACCAGCACCTGCAGGATGTGGACATTGAGCCCTATGTTAGCAA
GATGCTAGGAACCGGCAAGCTGGGCTTCTCCTTCGTGCGCATCACAGCCTTACTCATTGCAGGCAACCGT
CTGTGGGTGGGCACTGGCAATGGGGTTGTCATCTCCATCCCCTTGACTGAGACTGTGGTCCTGCATCGAG
GCCAGCTCCTAGGGCTCCGAGCCAACAAGACATCCCCAACATCTGGGGAGGGGACCCGCCCAGGGGGCAT
CATCCATGTGTATGGGGACGACAGCAGTGACAAGGCCGCCAGTAGTTTCATCCCCTACTGCTCCATGGCA
CAGGCTCAGCTTTGCTTCCATGGGCACCGTGATGCTGTCAAATTCTTTGTCTCTGTGCCAGGAAATGTGC
TGGCCACTCTCAATGGCAGTGTGCTAGACAGCCCATCAGAGGGCCCTGGGCCTGCTGCACCCGCTGCAGA
TGCTGAGGGCCAGAAGTTGAAGAATGCACTGGTGCTGAGTGGTGGTGAAGGTTACATTGACTTCCGTATC
GGAGACGGAGAGGATGATGAAACTGAGGAATGTGCCGGGGACGTGAACCAGACAAAGCCCTCGTTGTCCA
AGGCTGAGCGCAGCCACATCATCGTGTGGCAGGTGTCCTACACCCCTGAGTGA

Translation (1300 aa):
MMEIQMDEGGGVVVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVL
SENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQTRQLELKA
KNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQTESSLPGRSRKERPTSLN
VFPLADGMCPNDEMSESGQSSAAATPSTTGTKSNTPTSSVPSAAVTPLNESLQPLGDYVSVTKNNKQARE
KRNSRNMEVQVTQEMRNVSIGMGSSDEWSDVQDIIDSTPELDVCPETRLERTGSSPTQGIVNKAFGINTD
SLYHELSTAGSEVIGDVDEGADLLGEFSGMGKEVGNLLLENSQLLETKNALNVVKNDLIAKVDQLSGEQE
VLKGELEAAKQAKVKLENRIKELEEELKRVKSEAVTARREPREEVEDVSSYLCTELDKIPMAQRRRFTRV
EMARVLMERNQYKERLMELQEAVRWTEMIRASREHPSVQEKKKSTIWQFFSRLFSSSSSPPPAKRSYPSV
NIHYKSPTAAGFSQRRSHALCQISAGSRPLEFFPDDDCTSSARREQKREQYRQVREHVRNDDGRLQACGW
SLPAKYKQLSPNGGQEDTRMKNVPVPVYCRPLVEKDPSTKLWCAAGVNLSGWKPHEEDSSNGPKPVPGRD
PLTCDREGEGEPKSTHPSPEKKKAKETPEADATSSRVWILTSTLTTSKVVIIDANQPGTIVDQFTVCNAH
VLCISSIPAASDSDYPPGEMFLDSDVNPEDSGADGVLAGITLVGCATRCNVPRSNCSSRGDTPVLDKGQG
DVATTANGKVNPSQSTEEATEATEVPDPGPSESEATTVRPGPLTEHVFTDPAPTPSSSTQPASENGSESN
GTIVQPQVEPSGELSTTTSSAAPTMWLGAQNGWLYVHSAVANWKKCLHSIKLKDSVLSLVHVKGRVLVAL
ADGTLAIFHRGEDGQWDLSNYHLMDLGHPHHSIRCMAVVNDRVWCGYKNKVHVIQPKTMQIEKSFDAHPR
RESQVRQLAWIGDGVWVSIRLDSTLRLYHAHTHQHLQDVDIEPYVSKMLGTGKLGFSFVRITALLIAGNR
LWVGTGNGVVISIPLTETVVLHRGQLLGLRANKTSPTSGEGTRPGGIIHVYGDDSSDKAASSFIPYCSMA
QAQLCFHGHRDAVKFFVSVPGNVLATLNGSVLDSPSEGPGPAAPAADAEGQKLKNALVLSGGEGYIDFRI
GDGEDDETEECAGDVNQTKPSLSKAERSHIIVWQVSYTPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH