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Report for CCDS49888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49888.1 Public Mus musculus 16 Ncam2 23 108 98 CCDS HistoryNCBI Gene:17968Re-query CCDS DB by CCDS ID:49888.1Re-query CCDS DB by GeneID:17968See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49888.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067602.4 ENSMUSP00000063468.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067602.4Link to Ensembl Protein Viewer:ENSMUSP00000063468.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000067602Re-query CCDS DB by Protein ID:ENSMUSP00000063468
Original member Current member NCBI NM_001113208.1 NP_001106679.1 Accepted alive Link to Nucleotide Sequence:NM_001113208.1Link to Protein Sequence:NP_001106679.1Re-query CCDS DB by Nucleotide ID:NM_001113208Re-query CCDS DB by Protein ID:NP_001106679Link to BLAST:NP_001106679.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106679.1 837 O35136-1 837 100% 0 0

Chromosomal Locations for CCDS 49888.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 81200914 81200968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81432709 81432783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81434780 81434986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81437596 81437739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81443134 81443271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81455290 81455407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81461569 81461729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81465559 81465704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81490244 81490394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81512819 81513006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81517521 81517617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81526950 81527123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81576053 81576172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81578690 81578811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81589631 81589811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81615703 81615907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81621341 81621460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 81623342 81623453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2514 nt):
ATGAGCCTCCTCCTCTCCTTCTACCTGCTCGGGTTGCTTGTCAGGAGCGGGCAAGCTCTTCTTCAAGTGA
CAATTTCACTTAGCAAAGTAGAGCTTAGTGTGGGTGAGTCTAAATTCTTCACATGTACAGCCATTGGTGA
GCCTGAGAGTATCGACTGGTATAACCCTCAAGGAGAGAAGATCATTTCAACGCAGAGGGTTATGCTACAG
AAGGAGGGTGTCAGGTCACGACTCACCATCTACAATGCAAACATAGAAGATGCAGGGATATATCGCTGTC
AAGCGACAGATGCCAAAGGACAGACACAAGAAGCTACAGTAGTTTTGGAAATTTACCAAAAACTCACCTT
CAGAGAAGTGGTGTCCCCTCAAGAGTTCAAGCAAGGGGAGGATGCAGAAGTGGTTTGCAGAGTGAGCAGT
TCCCCAGCCCCTGCGGTCAGCTGGTTGTACCACAATGAGGAAGTCACCACCATCCCCGACAATCGGTTTG
CAGTGCTTGCAAACAATAATTTGCAGATCCTCAATATCAATAAAAGTGATGAAGGTATATACAGATGTGA
AGGAAGAGTGGAGGCGAGGGGAGAGATTGACTTCCGGGATATCATTGTTATTGTTAACGTTCCACCAGCA
ATCATGATGCCCCAGAAGTCCTTCAATGCTACAGCAGAGAGAGGAGAAGAGATGACCTTAACATGCAAGG
CCTCGGGCTCCCCAGATCCAACCATCTCTTGGTTCAGGAACGGCAAACTCATTGAAGAAAATGAAAAGTA
TATTTTAAAGGGCAGTAATACAGAGCTCACTGTCAGGAACATAATCAATAAAGACGGGGGCTCTTATGTC
TGCAAAGCAACAAACAAGGCAGGAGAAGATCAAAAGCAGGCCTTCCTTCAAGTCTTTGTACAGCCTCATA
TATTACAACTTAAAAATGAGACAACATCTGAGAATGGTCATGTCACACTCGTATGTGAAGCAGAAGGGGA
GCCTGTTCCAGAAATCACATGGAAAAGAGCCATAGATGGAGTCATGTTTTCTGAAGGTGATAAGAGTCCG
GATGGCCGCATCGAAGTTAAAGGGCAGCATGGACGCTCTTCACTGCACATTAGAGATGTGAAGTTGTCAG
ATTCGGGGAGATATGACTGTGAGGCCGCTAGTCGGATTGGTGGGCACCAGAGGAGCATGCACCTGGACAT
CGAATATGCTCCTAAGTTTGTTTCAAATCAGACAATGTATTACTCTTGGGAAGGAAATCCAATCAACATA
AGTTGTGATGTGACAGCAAACCCACCTGCGTCAATCCACTGGAGAAGAGAGAAACTGCTCTTACCAGCTA
AGAATACGACTCATTTAAAAACTCACAGTGTAGGAAGAAAGATGATACTCGAGATTGCCCCCACATCAGA
CAATGACTTTGGACGATATAACTGCACAGCTACTAACCGTATAGGCACAAGATTTCAGGAATATATTCTT
GAATTAGCAGATGTCCCCTCTAGTCCCCATGGAGTGAAGATTATAGAGCTGTCACAGACCACAGCCAAGA
TCTCTTTCAATAAACCCGAATCCCATGGAGGTGTGCCTATTCATCACTATCAAGTGGATGTCAAAGAAGT
GGCATCAGAAACCTGGAAAATAGTACGCTCCCATGGAGTTCAAACGATGGTTGTTTTGAGCAGTCTGGAA
CCAAATACGACTTACGAAATTAGGGTTGCAGCAGTGAATGGCAAAGGTCAAGGAGACTACAGTAAAATAG
AAATATTCCAGACACTGCCAGTCCGTGAGCCAAGTCCCCCTTCCATACATGGACAGCCAAGCAGTGGCAA
GAGTTTTAAAATCAGCATCACCAAGCAAGATGATGGAGGGGCTCCTATTTTAGAATACATTGTAAAATAC
AGAAGTAAAGACAAGGAAGATCAGTGGCTAGAGAAGAAGGTACAGGGAAATAAAGACCACATTATCTTGG
AGCATCTGCAGTGGACAATGGGCTACGAAGTGCAAATCACAGCTGCCAACAGACTGGGATATTCTGAGCC
TACTGTATATGAGTTCAGCATGCCCCCAAAACCCAACATTATTAAAGACACACTTTTTAATGGCCTTGGC
CTAGGAGCCATCATTGGCCTTGGAGTTGCTGCCCTTTTGCTAATCCTTGTGGTAACAGACGTCAGCTGCT
TCTTCATTCGACAATGTGGGTTACTAATGTGCATCACCAGGAGAATGTGCGGGAAAAAGAGTGGCTCCAG
TGGGAAAAGTAAAGAACTTGAAGAAGGAAAAGCAGCTTACCTGAAAGATGGATCAAAAGAACCGATAGTG
GAAATGAGAACAGAAGATGAAAGAATCACTAACCATGAAGATGGGAGTCCAGTAAATGAGCCAAATGAAA
CCACACCGCTAACAGAACCTGAAAAATTGCCTTTAAAAGAAGAAAACGGAAAGGAAGTTTTAAACGCAGA
AACTATAGAAATTAAAGTGTCCAATGACATCATCCAGTCTAAAGAAGATGACATAAAGGCATGA

Translation (837 aa):
MSLLLSFYLLGLLVRSGQALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVMLQ
KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSS
SPAPAVSWLYHNEEVTTIPDNRFAVLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA
IMMPQKSFNATAERGEEMTLTCKASGSPDPTISWFRNGKLIEENEKYILKGSNTELTVRNIINKDGGSYV
CKATNKAGEDQKQAFLQVFVQPHILQLKNETTSENGHVTLVCEAEGEPVPEITWKRAIDGVMFSEGDKSP
DGRIEVKGQHGRSSLHIRDVKLSDSGRYDCEAASRIGGHQRSMHLDIEYAPKFVSNQTMYYSWEGNPINI
SCDVTANPPASIHWRREKLLLPAKNTTHLKTHSVGRKMILEIAPTSDNDFGRYNCTATNRIGTRFQEYIL
ELADVPSSPHGVKIIELSQTTAKISFNKPESHGGVPIHHYQVDVKEVASETWKIVRSHGVQTMVVLSSLE
PNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKISITKQDDGGAPILEYIVKY
RSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMPPKPNIIKDTLFNGLG
LGAIIGLGVAALLLILVVTDVSCFFIRQCGLLMCITRRMCGKKSGSSGKSKELEEGKAAYLKDGSKEPIV
EMRTEDERITNHEDGSPVNEPNETTPLTEPEKLPLKEENGKEVLNAETIEIKVSNDIIQSKEDDIKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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