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Report for CCDS4969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4969.1 Public Homo sapiens 6 LMBRD1 24 110 108 CCDS HistoryNCBI Gene:55788Re-query CCDS DB by CCDS ID:4969.1Re-query CCDS DB by GeneID:55788See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4969.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000649934.3 ENSP00000497690.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000649934.3Link to Ensembl Protein Viewer:ENSP00000497690.1Re-query CCDS DB by Nucleotide ID:ENST00000649934Re-query CCDS DB by Protein ID:ENSP00000497690
Original member Current member NCBI NM_018368.4 NP_060838.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018368.4Link to Protein Sequence:NP_060838.3Re-query CCDS DB by Nucleotide ID:NM_018368Re-query CCDS DB by Protein ID:NP_060838Link to BLAST:NP_060838.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060838.3 540 Q9NUN5-1 540 100% 0 0

Chromosomal Locations for CCDS 4969.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 69676158 69676271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69676450 69676541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69697563 69697641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69699043 69699192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69700765 69700869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69701443 69701545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69701889 69701953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69713645 69713797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69718956 69719081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69737942 69738015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69741789 69741877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69749341 69749408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69752259 69752356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69780494 69780554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69790296 69790472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 69796813 69796881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGGCGACTTCTGGCGCGGCCTCGGCGGAGCTGGTGATCGGCTGGTGCATATTCGGCCTCTTACTACTGG
CTATTTTGGCATTCTGCTGGATATATGTTCGTAAATACCAAAGTCGGCGGGAAAGTGAAGTTGTCTCCAC
CATAACAGCAATTTTTTCTCTAGCAATTGCACTTATCACATCAGCACTTCTACCAGTGGATATATTTTTG
GTTTCTTACATGAAAAATCAAAATGGTACATTTAAGGACTGGGCTAATGCTAATGTCAGCAGACAGATTG
AGGACACTGTATTATACGGTTACTATACTTTATATTCTGTTATATTGTTCTGTGTGTTCTTCTGGATCCC
TTTTGTCTACTTCTATTATGAAGAAAAGGATGATGATGATACTAGTAAATGTACTCAAATTAAAACGGCA
CTCAAGTATACTTTGGGATTTGTTGTGATTTGTGCACTGCTTCTTTTAGTTGGTGCCTTTGTTCCATTGA
ATGTTCCCAATAACAAAAATTCTACAGAGTGGGAAAAAGTGAAGTCCCTATTTGAAGAACTTGGAAGTAG
TCATGGTTTAGCTGCATTGTCATTTTCTATCAGTTCTCTGACCTTGATTGGAATGTTGGCAGCTATAACT
TACACAGCCTATGGCATGTCTGCGTTACCTTTAAATCTGATAAAAGGCACTAGAAGCGCTGCTTATGAAC
GTTTGGAAAACACTGAAGACATTGAAGAAGTAGAACAACACATTCAAACGATTAAATCAAAAAGCAAAGA
TGGTCGACCTTTGCCAGCAAGGGATAAACGCGCCTTAAAACAATTTGAAGAAAGGTTACGAACACTTAAG
AAGAGAGAGAGGCATTTAGAATTCATTGAAAACAGCTGGTGGACAAAATTTTGTGGCGCTCTGCGTCCCC
TGAAGATCGTCTGGGGAATATTTTTCATCTTAGTTGCATTGCTGTTTGTAATTTCTCTCTTCTTGTCAAA
TTTAGATAAAGCTCTTCATTCAGCTGGAATAGATTCTGGTTTCATAATTTTTGGAGCTAACCTGAGTAAT
CCACTGAATATGCTTTTGCCTTTACTACAAACAGTTTTCCCTCTTGATTATATTCTTATAACAATTATTA
TTATGTACTTTATTTTTACTTCAATGGCAGGAATTCGAAATATTGGCATATGGTTCTTTTGGATTAGATT
ATATAAAATCAGAAGAGGTAGAACCAGGCCCCAAGCACTCCTTTTTCTCTGCATGATACTTCTGCTTATT
GTCCTTCACACTAGCTACATGATTTATAGTCTTGCTCCCCAATATGTTATGTATGGAAGCCAAAATTACT
TAATAGAGACTAATATAACTTCTGATAATCATAAAGGCAATTCAACCCTTTCTGTGCCAAAGAGATGTGA
TGCAGATGCTCCTGAAGATCAGTGTACTGTTACCCGGACATACCTATTCCTTCACAAGTTCTGGTTCTTC
AGTGCTGCTTACTATTTTGGTAACTGGGCCTTTCTTGGGGTATTTTTGATTGGATTAATTGTATCCTGTT
GTAAAGGGAAGAAATCGGTTATTGAAGGAGTAGATGAAGATTCAGACATAAGTGATGATGAGCCCTCTGT
CTATTCTGCTTGA

Translation (540 aa):
MATSGAASAELVIGWCIFGLLLLAILAFCWIYVRKYQSRRESEVVSTITAIFSLAIALITSALLPVDIFL
VSYMKNQNGTFKDWANANVSRQIEDTVLYGYYTLYSVILFCVFFWIPFVYFYYEEKDDDDTSKCTQIKTA
LKYTLGFVVICALLLLVGAFVPLNVPNNKNSTEWEKVKSLFEELGSSHGLAALSFSISSLTLIGMLAAIT
YTAYGMSALPLNLIKGTRSAAYERLENTEDIEEVEQHIQTIKSKSKDGRPLPARDKRALKQFEERLRTLK
KRERHLEFIENSWWTKFCGALRPLKIVWGIFFILVALLFVISLFLSNLDKALHSAGIDSGFIIFGANLSN
PLNMLLPLLQTVFPLDYILITIIIMYFIFTSMAGIRNIGIWFFWIRLYKIRRGRTRPQALLFLCMILLLI
VLHTSYMIYSLAPQYVMYGSQNYLIETNITSDNHKGNSTLSVPKRCDADAPEDQCTVTRTYLFLHKFWFF
SAAYYFGNWAFLGVFLIGLIVSCCKGKKSVIEGVDEDSDISDDEPSVYSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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