NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49516.1 Public Mus musculus 14 Spata13 23 108 98 CCDS HistoryNCBI Gene:219140Re-query CCDS DB by CCDS ID:49516.1Re-query CCDS DB by GeneID:219140See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022566.13 ENSMUSP00000022566.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022566.13Link to Ensembl Protein Viewer:ENSMUSP00000022566.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022566Re-query CCDS DB by Protein ID:ENSMUSP00000022566
Original member Current member EBI ENSMUST00000160973.7 ENSMUSP00000123928.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160973.7Link to Ensembl Protein Viewer:ENSMUSP00000123928.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160973Re-query CCDS DB by Protein ID:ENSMUSP00000123928
Original member NCBI NM_001033272.2 NP_001028444.1 Updated not alive Link to Nucleotide Sequence:NM_001033272.2Link to Protein Sequence:NP_001028444.1Re-query CCDS DB by Nucleotide ID:NM_001033272Re-query CCDS DB by Protein ID:NP_001028444
Current member NCBI NM_001033272.3 NP_001028444.1 Accepted alive Link to Nucleotide Sequence:NM_001033272.3Link to Protein Sequence:NP_001028444.1Re-query CCDS DB by Nucleotide ID:NM_001033272Re-query CCDS DB by Protein ID:NP_001028444Link to BLAST:NP_001028444.1

Chromosomal Locations for CCDS 49516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 60690995 60692548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60706714 60707079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60709425 60709569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60745645 60745781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60746714 60746893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60747441 60747626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60749963 60750142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60751635 60751867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60753781 60753910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60756212 60756584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60759583 60759657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 60760876 60761051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3735 nt):
ATGACAACAGCCCAGGATGGCCATGGGCAAGGTGCCACAGCCACTTGTTCAGCCTCCAACCCAAAGGCCC
CG
AAAATGGTGACATCCTCAGCATGTCAGAATGGAGGCTGCAAAAGCAGCCCCAGCAGTGATCCCGAAGC
C
GGGGAAACCAGGCTCAGCCCATCGAAGCTGGTACGTCTCTTCTCTGGTAGTCGGAAGAGGATGAATTCG
AAC
TCTGAGAGACCTCGCTCAGTCGTCCTTGTGGGGAATTCCTCCACGTGGAATGCCCTGGCCTCCTTCC
GT
AAAATGGGCTCCTTTAAAAGACTAAAATCTTCTGTCCTTCAAGGAATTCAGAACCGGGAGGGGGCAGA
A
GTTTCCAAGGAGGAGCCTACAGGAGACCCAGGAAGGGCTGCTCCCAATGGCACCGTTGCCATCCTGGGA
AAG
GGCCTGGGCAGGTGTACATCCTTGGGCCCTGTAGGAGATGGCGCCGGGTCTGACTGCTCAGACCCCG
AG
GACACGGAGGACGCCTTCCAGAGGAGCACACACCGTTCTCGCAGCATCCGCAGGGCCTATGGCCTGGG
C
CGCATCAGCCTGCTGGACCTGGGGCGGCAGCCAGTGCCGGAGCCCGCCGTGTGTGAGATCCAAGTTCGA
GAC
CCTGAACCCAGCAGGGCTGTGCCTCTGCCACGCAGAAGCAAGAGCATCGACAGCTTGAGCGTCCTGA
AG
AGCTCCTTCAAGCGCAAGTCTGCATCCAACCTCACGGAACTGCAGGGTGACAGGCAGGTTCCCTCCAG
A
ACCTTGAGCAGCTTCTTCACAGACCCGGAGAAGCCGGGTGGCTCAGAGAGAAGAACCAGACGCTGGAGG
AGC
CCCATCCGGGCCAAGGACTTCGACAGAGTCCTGAGACTGGTGAGCAATGTCAAGGATGCGGCTTGGA
AG
AGGGAGGCCCCCAGGAGTGCAGCCCCTGGCCCTGGTCCCGGTCTCGGGGATGAGAACCCACTACTTGC
G
CCACGAAGCAAGCTACACGATGACTACTCGCGTCGTACTAGCAGCAGCGTGGAGCCAGATGCCAGGCGT
GGC
GGCTCACCCTGTATCCCTGCACCATGCACCACTGCGCCCTACGCAGCTCCAGAGCCCCACTTAGATG
TG
GATACTGCAGTATTCCCCCTGGAAACTAAAAGTGCTCAGCCACTGGGAAATGATGGACCTCGTGCCAG
C
AGTCCCTCACCAATCCCCACGGACCCAGAAGGGTTGAGCCAAGGCTCCAGTGAGGCACATACTGGCAGC
CAA
CATCCTTTTAATCCCGTGCAGCTTCCCACTCCTCTGAGACCTACCACACCCAAGCCCCAAAGCCCTC
AG
AGCCCAGGGAGTACTAAGTGCCCCAGTAGTCTGAGTGTGCTGTCCCTCAGTTCAGCGGACAGTGAAGA
G
CGGACTGAGGATGCTTCGCACAGGCAACCGGGACCCGTGTCCCTCCAGGATACTGTCCTTAACGCTGCT
GGT
GATGTGGGGGGAGAAAGCGGTGACAGCTATTTTCCCGAGAATCTCGATGGAGCCACCCATCCAGAAG
AG
AAGAAGGAAGAGGTCCTGGTGACTGAGGATGACTGGCCGCAGGGCTCAGCCCTGGAGGAGGAGCAGAA
T
GAGGCGCCTCGAATCTCCAGGAGGAGGTGGGGCTCGGGACGCCGCACCCGGCCACGACCACTGTCTGAC
TAT
GGCCAGCTGGCCGGCAGAAGCTTGTCCATTCCTGAAGATGCCATTGCTGCAGACCCTCCAGATGAGG
AC
CACGTGGACAGGATGCACCCAGCAAGTGTGACTACCACCAGCCAGGATCCATGCGCCCCCTCAGGCTC
T
TGCAGGGGAGGCCGGAGAAGGCGACCTATATCTGTGATTGGAGGGGTCAGCTTCTATGGCAACACCCAG
GTA
GAGGATGTGGAGAACCTCTTGGTCCAACCAGCAGCCAGGCCTCCTGTGCCTGCACACCAAGTTCCAC
CC
TACAAGGCTGTGTCTGCCCGCCTCCGGCCCTTCACCTTCTCTCAGAGCACTCCCATCGGGCTGGACCG
C
GTGGGGCGGCGACGGCAGATGAAAACATCCAATGTCTCTTCAGATGGAGGTGCGGAGTCTTCGGCCTTA
GTG
GATGATAATGGTAGTGAGGAAGACTTCAGCTATGAGGAGCTCTGCCAGGCCAACCCTCGGTACCTGC
AG
CCAGGAGGGGAACAGCTGGCCATCAATGAGCTCATCAGCGATGGCAGCGTGGTCTGTGCAGAAGCACT
G
TGGGACCATGTGACCATGGACGACCAGGAGCTGGGCTTCAAGGCTGGGGATGTCATCCAAGTTCTGGAA
GCT
TCTAACAAGGACTGGTGGTGGGGCCGGAATGAAGACAAAGAGGCCTGGTTCCCTGCAAGCTTTGTTA
GG
CTTCGAGTCAATCAGGAGGAGCTGCCCGAGAACTGCAGCAGCTCCCATGGGGAAGAGCAGGATGAGGA
C
ACCAGCAAAGCCCGCCACAAGCACCCAGAGAGCCAGCAGCAGATGCGGACCAACGTCATCCAGGAGATA
ATG
AACACCGAGCGAGTGTATATCAAGCACCTGAAGGACATCTGCGAGGGCTATATCCGACAGTGTCGTA
AG
CACACGGGAATGTTCACCGTTGCGCAGCTAGCCACTATTTTTGGAAACATTGAAGACATTTACAAATT
C
CAAAGAAAGTTTCTGAAAGACCTTGAGAAACAGTACAACAAAGAGGAACCTCACTTGAGTGAAATAGGA
TCC
TGCTTTCTTGAGCACCAAGAGGGCTTCGCCATCTACTCTGAGTACTGCAACAACCACCCAGGCGCCT
GT
GTGGAGCTGTCCAACCTCATGAAACACAGCAAGTACCGGCACTTCTTCGAGGCCTGCCGCCTGCTCCA
G
CAGATGATCGACATCGCCCTGGACGGCTTCCTCCTCACGCCTGTGCAGAAGATCTGCAAATACCCGCTG
CAG
CTGGCTGAGCTGCTCAAGTACACCACACAGGAGCACGGCGATTACAACAATATAAAGGCAGCCTATG
AA
GCCATGAAGAACGTGGCCTGCTTGATCAATGAACGCAAGCGCAAGCTGGAGAGCATCGACAAGATCGC
C
CGCTGGCAGGTGTCCATCGTAGGCTGGGAGGGCCTGGACATTCTAGACCGAAGCTCTGAGTTGATTCAT
TCC
GGAGAGCTGACCAAAATCACCAGGCAGGGCAAGAGCCAGCAACGCATCTTCTTCCTTTTCGACCACC
AG
CTGGTGTCCTGCAAGAAGGACCTGCTGCGCAGGGACATGCTATACTACAAGGGCCGCATGGACATGGA
C
GAGGTAGAGCTTGTGGACGTGGAGGATGGGCGGGACAAAGACTGGAGCCTCAGCCTGCGGAATGCCTTC
AAG
CTGGTCAGCAAAGCCACGGACGAGGTCCATCTGTTCTGCGCCAGAAAGCAAGAAGACAAGGCCAGGT
GG
CTGCAGGCCTATGCGGACGAGAGGCGGCGGGTGCAGGAGGACCAGCAGATGGGTATGGAAATCCCAGA
A
AATCAGAAGAAACTCGCCATGTTGAACGCTCAGAAGGCAGGACATGGGAAATCTAAAGGCTACAACAGC
TGT
CCCGTGGCCCCACCCCACCAGAGCCTGCCGCCCCTTCACCAGCGCCACATCACTGTGCCCACCAGCA
TC
CCGCAGCAGCAGGTCTTTGCCTTGGCTGAGCCCAAGAGGAAGCCATCGATATTCTGGCACACTTTCCA
C
AAACTCACCCCCTTCCGGAAATGA


Translation (1244 aa):
MTTAQDGHGQGATATCSASNPKAPKMVTSSACQNGGCKSSPSSDPEAGETRLSPSKLVRLFSGSRKRMNS
N
SERPRSVVLVGNSSTWNALASFRKMGSFKRLKSSVLQGIQNREGAEVSKEEPTGDPGRAAPNGTVAILG
K
GLGRCTSLGPVGDGAGSDCSDPEDTEDAFQRSTHRSRSIRRAYGLGRISLLDLGRQPVPEPAVCEIQVR
D
PEPSRAVPLPRRSKSIDSLSVLKSSFKRKSASNLTELQGDRQVPSRTLSSFFTDPEKPGGSERRTRRWR
S
PIRAKDFDRVLRLVSNVKDAAWKREAPRSAAPGPGPGLGDENPLLAPRSKLHDDYSRRTSSSVEPDARR
G
GSPCIPAPCTTAPYAAPEPHLDVDTAVFPLETKSAQPLGNDGPRASSPSPIPTDPEGLSQGSSEAHTGS
Q
HPFNPVQLPTPLRPTTPKPQSPQSPGSTKCPSSLSVLSLSSADSEERTEDASHRQPGPVSLQDTVLNAA
G
DVGGESGDSYFPENLDGATHPEEKKEE
VLVTEDDWPQGSALEEEQNEAPRISRRRWGSGRRTRPRPLSD
Y
GQLAGRSLSIPEDAIAADPPDEDHVDRMHPASVTTTSQDPCAPSGSCRGGRRRRPISVIGGVSFYGNTQ
V
EDVENLLVQ
PAARPPVPAHQVPPYKAVSARLRPFTFSQSTPIGLDRVGRRRQMKTSNVSSDGGAESSAL
V
DDNGSEEDFSYEELCQANPRYLQPGGEQLAINE
LISDGSVVCAEALWDHVTMDDQELGFKAGDVIQVLE
A
SNKDWWWGRNEDKEAWFPASFVR
LRVNQEELPENCSSSHGEEQDEDTSKARHKHPESQQQMRTNVIQEI
M
NTERVYIKHLKDICE
GYIRQCRKHTGMFTVAQLATIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIG
S
CFLEH
QEGFAIYSEYCNNHPGACVELSNLMKHSKYRHFFEACRLLQQMIDIALDGFLLTPVQKICKYPL
Q
LAELLKYTTQEH
GDYNNIKAAYEAMKNVACLINERKRKLESIDKIARWQVSIVGWEGLDILDRSSELIH
S
GELTKITRQGKSQQRIFFLFDHQLVSCKKDLLRRDMLYYKGRMDMDEVELVDVEDGRDKDWSLSLRNAF
K
LVSKATDEVHLFCARKQEDKARWLQAYADERRRVQEDQQM
GMEIPENQKKLAMLNAQKAGHGKSKGYNS
C
PVAPPHQSLPPLHQRHITVPTSIPQQQVFALAEPKRKPSIFWHTFHKLTPFRK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser