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Report for CCDS49034.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49034.1 Public Mus musculus 12 Atp6v1c2 23 108 98 CCDS HistoryNCBI Gene:68775Re-query CCDS DB by CCDS ID:49034.1Re-query CCDS DB by GeneID:68775See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49034.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020884.15 ENSMUSP00000020884.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020884.15Link to Ensembl Protein Viewer:ENSMUSP00000020884.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000020884Re-query CCDS DB by Protein ID:ENSMUSP00000020884
Original member Current member NCBI NM_001159632.1 NP_001153104.1 Accepted alive Link to Nucleotide Sequence:NM_001159632.1Link to Protein Sequence:NP_001153104.1Re-query CCDS DB by Nucleotide ID:NM_001159632Re-query CCDS DB by Protein ID:NP_001153104Link to BLAST:NP_001153104.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153104.1 437 Q99L60-2 437 100% 0 0

Chromosomal Locations for CCDS 49034.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 17284859 17284948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17285113 17285245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17288083 17288180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17288996 17289133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17291429 17291522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17291628 17291720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17294145 17294213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17294676 17294774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17297729 17297820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17301121 17301215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17307471 17307500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17308272 17308357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17321598 17321665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 17323338 17323466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGTCTGAGTTTTGGCTTATTTCGGCCCCTGGCGATAAGGAAAATTTACAGGCTCTGGAAAGGATGAACA
ATGTAACTTCAAAGTCTAACCTGTCCCACAACACCAAGTTTGCCATCCCAGACTTCAAGGTGGGGACTTT
GGATTCCCTTGTTGGCCTCTCTGATGAGCTGGGGAAACTCGATACCTTTGCTGAAAGCCTCATAAAGAGA
ATGGCACAGAGTGTGGTGGAGGTCATGGAAGATTCCAAGGGGAAAGCACACGAGACCCTCCTGGCTAACG
GAGGTCTGAAGGAAAAGATGAAATGTTTAAAGATTGACCTGACATCCTTCGTGACGCACTTCGAGTGGGA
CATGGCCAAATATCCCGCCAAGCAGCCACTGGTGAGCGTGGTGGACACACTGGCCAAGCAACTGGCACAA
ATCGAGACAGACCTGAAGTCCCGGACAGCCGCCTACAGCGTTCTGAAGGCCAACCTGGAGAACTTGGAGA
AGAGATCCACGGGGAACCTCTTCACTCGGACACTGAGCGATATTGTCAGCAAGGAAGACTTCGTACTTGA
TTCTGAATATCTCATAACCCTCCTGGTCATCGTCCCCAAGTCAAGCTTTGCACAGTGGCAGAAGACATAT
GAGTCCCTATCGGACATGGTGGTCCCTCGGTCAACCAAATTGATCGCCGAGGACAACGAAGGTGGCCTCT
TCACGGTGACTCTCTTCCGAAAAGTGATCGAAGATTTCAAAGTCAAAGCCAAAGAAAACAAGTTCATTGT
CCGGGAATTTTACTATGATGAAAAAGAAATTAAACGAGAAAGGGAGGAGATGACCAGGTTGCTGTCTGAT
AAGAAACAACAGTATCCAACTTCCTGTGTTGCTCTAAAAAAGGGATCAGCCACCTACCGTGACCACAAGG
TTAAGGTAGCCCCGCTAGGTAACCCTGCTAGGCCTGCTGCGGGGCAGACCGACAGAGACAGAGAGAGTGA
GGGCGAGGGTGAGGGACCTCTGCTGCGCTGGCTCAAGGTGAACTTCAGCGAGGCCTTTATTGCCTGGATC
CACATTAAGGCCCTGAGAGTGTTTGTGGAGTCTGTGCTCAGGTATGGACTTCCAGTGAACTTCCAGGCTG
TGCTCCTACAGCCCCATAAAAAGTCAGCCACCAAACGCCTGAGAGAGGTGCTCAACTCTGTCTTCCGGCA
CCTGGATGAAGTTGCTGCAGCAAGCATACTGGATGCATCCGTGGAGATTCCTGGACTGCAGCTCAGCAAC
CAGGACTATTTCCCCTATGTGTACTTCCATATCGACCTCAGCCTTCTTGACTAG

Translation (437 aa):
MSEFWLISAPGDKENLQALERMNNVTSKSNLSHNTKFAIPDFKVGTLDSLVGLSDELGKLDTFAESLIKR
MAQSVVEVMEDSKGKAHETLLANGGLKEKMKCLKIDLTSFVTHFEWDMAKYPAKQPLVSVVDTLAKQLAQ
IETDLKSRTAAYSVLKANLENLEKRSTGNLFTRTLSDIVSKEDFVLDSEYLITLLVIVPKSSFAQWQKTY
ESLSDMVVPRSTKLIAEDNEGGLFTVTLFRKVIEDFKVKAKENKFIVREFYYDEKEIKREREEMTRLLSD
KKQQYPTSCVALKKGSATYRDHKVKVAPLGNPARPAAGQTDRDRESEGEGEGPLLRWLKVNFSEAFIAWI
HIKALRVFVESVLRYGLPVNFQAVLLQPHKKSATKRLREVLNSVFRHLDEVAAASILDASVEIPGLQLSN
QDYFPYVYFHIDLSLLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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