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Report for CCDS4877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4877.1 Public Homo sapiens 6 PEX6 24 110 108 CCDS HistoryNCBI Gene:5190Re-query CCDS DB by CCDS ID:4877.1Re-query CCDS DB by GeneID:5190See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4877.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304611.13 ENSP00000303511.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304611.13Link to Ensembl Protein Viewer:ENSP00000303511.8Re-query CCDS DB by Nucleotide ID:ENST00000304611Re-query CCDS DB by Protein ID:ENSP00000303511
Original member Current member NCBI NM_000287.4 NP_000278.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000287.4Link to Protein Sequence:NP_000278.3Re-query CCDS DB by Nucleotide ID:NM_000287Re-query CCDS DB by Protein ID:NP_000278Link to BLAST:NP_000278.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000278.3 980 Q13608-1 980 100% 0 0

Chromosomal Locations for CCDS 4877.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42964335 42964471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42964790 42964929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42965075 42965152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42965252 42965368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42965681 42965789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42966044 42966105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42966242 42966447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42966525 42966657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42966782 42966858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42967368 42967563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42968290 42968498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42968874 42968985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42969668 42969801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42969885 42969987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42974003 42974086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42974875 42975038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42978269 42979150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2943 nt):
ATGGCGCTGGCTGTCTTGCGGGTCCTGGAGCCCTTTCCGACCGAGACACCCCCGTTGGCAGTGCTGCTGC
CACCCGGGGGCCCGTGGCCGGCGGCGGAGCTGGGCCTGGTGCTGGCCCTGAGGCCTGCAGGGGAGAGCCC
GGCAGGGCCGGCGCTGCTGGTGGCAGCCCTGGAGGGGCCGGACGCGGGCACCGAAGAGCAGGGTCCCGGG
CCGCCGCAGCTACTGGTTAGCCGCGCGCTGCTGCGGCTCCTGGCACTGGGCTCCGGGGCCTGGGTGCGGG
CGCGGGCGGTGCGGCGGCCCCCGGCGCTAGGTTGGGCACTGCTTGGCACCTCGCTGGGGCCTGGGCTCGG
ACCGCGAGTCGGGCCGCTGCTGGTGAGGCGCGGAGAGACCCTCCCAGTGCCCGGACCGCGGGTGCTGGAG
ACGCGGCCGGCGTTGCAAGGGCTGCTGGGCCCAGGGACTCGGCTGGCTGTGACTGAGCTCCGCGGGCGGG
CCAGACTGTGTCCAGAGTCTGGGGACAGCAGTCGGCCCCCACCCCCGCCCGTGGTGTCCTCCTTTGCGGT
TTCTGGCACAGTGCGGCGACTCCAGGGAGTTCTGGGAGGGACTGGAGATTCACTAGGGGTGAGCCGGAGC
TGTCTCCGTGGCCTTGGCCTCTTCCAGGGCGAATGGGTGTGGGTGGCCCAGGCCAGAGAGTCATCGAACA
CTTCACAGCCGCACTTGGCTAGGGTGCAGGTCCTAGAACCTCGCTGGGACCTCTCTGATAGACTGGGACC
CGGCTCTGGACCGCTGGGAGAGCCCCTCGCTGACGGACTGGCGCTTGTCCCTGCCACTTTGGCTTTTAAT
CTTGGCTGTGACCCCCTGGAAATGGGAGAGCTCAGAATTCAGAGGTACTTGGAAGGCTCCATCGCCCCTG
AAGACAAAGGAAGCTGCTCATTGCTGCCTGGGCCTCCATTTGCCAGAGAGTTACACATCGAAATTGTGTC
TTCTCCCCACTACAGCACTAATGGAAATTATGACGGTGTTCTTTACCGGCACTTTCAGATACCCAGGGTA
GTCCAGGAAGGGGATGTTCTATGTGTGCCAACAATTGGGCAAGTAGAGATCCTGGAAGGAAGTCCAGAGA
AACTGCCCAGGTGGCGGGAAATGTTTTTTAAAGTGAAGAAAACAGTTGGGGAAGCTCCAGATGGACCAGC
CAGTGCCTACTTGGCCGACACCACCCATACCTCCTTGTACATGGTGGGTTCTACCCTGAGCCCTGTTCCA
TGGCTCCCTTCAGAGGAATCCACTCTCTGGAGCAGTTTGTCTCCTCCAGGCCTGGAGGCCTTGGTGTCTG
AACTCTGTGCTGTCCTGAAGCCTCGCCTCCAGCCAGGGGGTGCCCTGCTGACAGGAACTAGCAGTGTCCT
TCTACGGGGCCCCCCAGGCTGTGGGAAGACCACAGTAGTTGCTGCTGCCTGTAGTCACCTTGGGCTCCAC
TTACTGAAGGTGCCCTGCTCCAGCCTCTGTGCAGAAAGTAGTGGGGCTGTGGAGACAAAACTGCAGGCCA
TCTTCTCCCGGGCCCGCCGTTGCCGGCCTGCAGTCCTGTTGCTCACAGCTGTGGACCTTCTGGGCCGGGA
CCGTGATGGGCTGGGTGAGGATGCCCGTGTGATGGCTGTGCTGCGTCACCTCCTCCTCAATGAGGACCCC
CTCAACAGCTGCCCTCCCCTCATGGTTGTGGCCACCACAAGCCGGGCCCAGGACCTGCCTGCTGATGTGC
AGACAGCATTTCCTCATGAGCTCGAGGTGCCTGCTCTGTCAGAGGGGCAGCGGCTCAGCATCCTGCGGGC
CCTCACTGCCCACCTTCCCCTGGGCCAGGAGGTGAACTTGGCACAGCTAGCACGGCGGTGTGCAGGCTTT
GTGGTAGGGGATCTCTATGCCCTTCTGACCCACAGCAGCCGGGCAGCCTGCACCAGGATCAAGAACTCAG
GTTTGGCAGGTGGCTTGACTGAGGAGGATGAGGGGGAGCTGTGTGCTGCCGGCTTTCCTCTCCTGGCTGA
GGACTTTGGGCAGGCACTGGAGCAACTGCAGACAGCTCACTCCCAGGCCGTTGGAGCCCCCAAGATCCCC
TCAGTGTCCTGGCATGATGTGGGTGGGCTGCAGGAGGTGAAGAAGGAGATCCTGGAGACCATTCAGCTCC
CCCTGGAGCACCCTGAGCTACTGAGCCTGGGCCTGAGACGCTCAGGCCTTCTGCTCCATGGGCCCCCTGG
CACCGGCAAGACCCTTCTGGCCAAGGCAGTAGCCACTGAGTGCAGCCTTACCTTCCTCAGCGTGAAGGGG
CCAGAGCTCATTAACATGTATGTGGGCCAAAGTGAGGAGAATGTGCGGGAAGTGTTTGCCAGGGCCAGGG
CTGCAGCTCCATGCATTATCTTCTTTGATGAACTGGACTCTTTGGCCCCAAGCCGGGGGCGAAGTGGAGA
TTCTGGAGGAGTGATGGACAGGGTGGTGTCTCAGCTCCTTGCCGAGCTAGATGGGCTGCACAGCACTCAG
GATGTGTTTGTGATTGGAGCCACCAACAGACCAGATCTCCTGGACCCTGCCCTTCTGCGGCCTGGCAGAT
TTGACAAGCTGGTGTTTGTGGGGGCAAATGAGGACCGGGCCTCCCAGCTACGCGTTCTAAGTGCCATCAC
ACGCAAATTCAAGCTAGAGCCATCTGTGAGCCTGGTAAACGTGCTAGATTGCTGCCCTCCCCAGCTGACG
GGCGCGGACCTCTACTCTCTCTGCTCTGATGCTATGACAGCTGCCCTCAAACGCAGGGTTCATGACCTGG
AGGAAGGGCTGGAGCCAGGTAGCTCAGCACTGATGCTCACCATGGAGGACTTGCTGCAGGCTGCCGCCCG
GCTGCAACCCTCAGTCAGTGAGCAGGAGCTGCTCCGGTACAAGCGCATCCAGCGCAAGTTTGCTGCCTGC
TAG

Translation (980 aa):
MALAVLRVLEPFPTETPPLAVLLPPGGPWPAAELGLVLALRPAGESPAGPALLVAALEGPDAGTEEQGPG
PPQLLVSRALLRLLALGSGAWVRARAVRRPPALGWALLGTSLGPGLGPRVGPLLVRRGETLPVPGPRVLE
TRPALQGLLGPGTRLAVTELRGRARLCPESGDSSRPPPPPVVSSFAVSGTVRRLQGVLGGTGDSLGVSRS
CLRGLGLFQGEWVWVAQARESSNTSQPHLARVQVLEPRWDLSDRLGPGSGPLGEPLADGLALVPATLAFN
LGCDPLEMGELRIQRYLEGSIAPEDKGSCSLLPGPPFARELHIEIVSSPHYSTNGNYDGVLYRHFQIPRV
VQEGDVLCVPTIGQVEILEGSPEKLPRWREMFFKVKKTVGEAPDGPASAYLADTTHTSLYMVGSTLSPVP
WLPSEESTLWSSLSPPGLEALVSELCAVLKPRLQPGGALLTGTSSVLLRGPPGCGKTTVVAAACSHLGLH
LLKVPCSSLCAESSGAVETKLQAIFSRARRCRPAVLLLTAVDLLGRDRDGLGEDARVMAVLRHLLLNEDP
LNSCPPLMVVATTSRAQDLPADVQTAFPHELEVPALSEGQRLSILRALTAHLPLGQEVNLAQLARRCAGF
VVGDLYALLTHSSRAACTRIKNSGLAGGLTEEDEGELCAAGFPLLAEDFGQALEQLQTAHSQAVGAPKIP
SVSWHDVGGLQEVKKEILETIQLPLEHPELLSLGLRRSGLLLHGPPGTGKTLLAKAVATECSLTFLSVKG
PELINMYVGQSEENVREVFARARAAAPCIIFFDELDSLAPSRGRSGDSGGVMDRVVSQLLAELDGLHSTQ
DVFVIGATNRPDLLDPALLRPGRFDKLVFVGANEDRASQLRVLSAITRKFKLEPSVSLVNVLDCCPPQLT
GADLYSLCSDAMTAALKRRVHDLEEGLEPGSSALMLTMEDLLQAAARLQPSVSEQELLRYKRIQRKFAAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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