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Report for CCDS48687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48687.1 Public Mus musculus 10 Lrriq1 23 108 98 CCDS HistoryNCBI Gene:74978Re-query CCDS DB by CCDS ID:48687.1Re-query CCDS DB by GeneID:74978See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 48687.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166240.7 ENSMUSP00000131419.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166240.7Link to Ensembl Protein Viewer:ENSMUSP00000131419.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166240Re-query CCDS DB by Protein ID:ENSMUSP00000131419
Original member Current member NCBI NM_001163559.2 NP_001157031.1 Accepted alive Link to Nucleotide Sequence:NM_001163559.2Link to Protein Sequence:NP_001157031.1Re-query CCDS DB by Nucleotide ID:NM_001163559Re-query CCDS DB by Protein ID:NP_001157031Link to BLAST:NP_001157031.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157031.1 1673 Q0P5X1-1 1673 100% 0 0

Chromosomal Locations for CCDS 48687.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 103063357 103063509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103068903 103068963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103071050 103071200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103137107 103137208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103144482 103144564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103144801 103144896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103145407 103145528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103146204 103146293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103156337 103156456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103161709 103161910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103170421 103170858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103173217 103173396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103178722 103178815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103181814 103181887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103187347 103187474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103189832 103190025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103200557 103200707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103202358 103202510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103214460 103216112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103218078 103218152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103221236 103221459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103223693 103223810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103224880 103224971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103227176 103227302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103234013 103234153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5022 nt):
ATGGAGGACAGTGACGACAGCGAGGCAAAGCTCAGAGAAGAAATCGAAGCTGAATTGGATAAAATCAGCA
TC
TCTTCCTTGGAAAATGATGAGGTTGAAAATGATTCAGTGTCAGACACACAGAGTGACAGTAGTGACAC
T
GATTTGCTTGAATTGCCAGAGTCAGTTCTTCATTATATCAACGTCATAAAGAACAAGAGTAAAACTGCT
GAA
GAACTCATTCTTCAAGACGTAGAAGATACTGATATCTTCAGTGATTATAAGAAAGGTTGTAACCATG
GC
ACAGTGACTGACAGTCACATGCATTTGAGGACTGGGTCATTGCCGGAATCTAAAGCAAATGCTGAGCA
A
TTAATGAAGATATTATCTGTAATAGAAAAGGAAGAATTTATGAGAAGTCTAGCTCCTTCTGCCAGGTGT
GTT
TCCGTTCGTGAGATTATTACTCCTGACACACCCATGGATGAATATATTTTACCAGATGAGGCTGATT
TG
AGTTTCGGATACTTTGAAGTAGAAGAAAGATGTAGAAAATCTTTTGAAGCTTGGCAGGACAAACAACA
A
GAACTAGAAGAAAAGGATAAAGAAACTCTGGAAGCTCAGAATGAAAGAGAAAAGCGGACCTTTCAAGAG
GAA
GACGAGAAGAGACAGTGCTGGATGAGACAGTTTGAAGTTGAAAAGAAACACTTAGAGGATCTTCAGA
AG
CAAGACCAAGACAAAATGAATGATGAACTCCATAAAGAAGAGAAAATATGGAAAGAAAAATACAGACA
G
CATGAGGAACATATCAGAAACTTGCACTTAAAAATGGAGGAGGAGAGAACAAGATTAAGTGAGCTACAA
GAA
AAAGAAAAGGCACGTTTATTCAAACTGCGGTATGATGCAGCTGTAAAAATTCAAGCCACTTATAGAG
CA
TCAGTAACTTACCGAAAATATAGCCCAATCATAAAAGAGCAAATGGAAAAGAAGAGGAGGAGAGCACA
G
GAGTTGAAAGAGAAGGAGGCAAAGATACGACAGAAGGAGGAAGAAAAGAGGAGGAGACTTGAAGAGGAG
CAG
AGGGTAGAGGAGGAGAAGAAGAAGAAGATGCTGGAGGAGAGGAGGAGACGAGAGAGGGAATACGAAG
AG
AAAAAGAGCATCCTGAGACAAGAGAGAGAAGAGCAACGAAGCAAGGAAGTGATAAGACTGAGGGAACA
T
GCCCACTCGCCACTGATCATTACCTGTGCTTTAAAGAAAGGAGATTGCCATGGCAAGCAGCAAGCTATT
GCA
CATGTGCCAAAGGGTAAGGGTACTATAGCCAAAGAGTCAGTGGACAGCAACTCAAAGAAGCAAGAAG
AT
GCTTGCCTCGCTCAGCAATTAAACAAGAGAGAAAACACACACGTGCAGCAGCTTGCGATGAAGAAATC
A
ACAGGAATAAAATTAAAACCAAACCAGGCAATTTTGGTAGAATTAAAAATGAACGAGAAAAATGAAAGT
TTA
CCAAAATTAAAAATCAATGAAAACTTATCAAAAAACCAATGTTCAGAACAACCTTCTGACCAAGAAT
TT
AACGCTGAAAATGTAGACCAAAAAAATGAATTGGAAAACTCCAACCTAAAGGAAAGTGTGAATGAACA
G
TACCCGTGGCAAGGACTAGAGTCAGATACTCAGACAGAGGAACATGTGGAGCATGTCAGGGAGGAGAAG
GTG
GGACAAGAAACCGAAAAACTATTTGGATTCAATCAAGAAGTGAGTGCAGAAGACAGTAAACAAGCAC
AA
GGAGTCATGGAGGAGACCCGGGAGGGATTGGCTGAAGAGATAGAAATCAAAGAGATGACACAGCAAGG
T
GGGCCATCGGATGAGAATAATAGCTCACCTATTTCCATGCAGAAAAGCCTACCATCACTGACACCAGAC
AAT
CCTGAACCTGTAGAAAGAAGTGTAACACTAGAAGAAGACCAAGAGACTGATTTAAAATCAGAAAGAA
TT
GAGGAAATCCCAGAAGAAGGTGTGCTGTCCTGTGATGCTGCAGTCATTAACGCAGATGCCTCTGTGCA
T
ACAGAAGGCGAGGCAGACCTGCAGGATTCTGCCTCAGGCAAGCTTGCTCCCAGTGAAGAAGCTGGTAGT
CAC
AGTGCTAATAACCTCTTGGCCACTGAAGAAGTGGAAGACTCTCCTAAATCTGAAATTCAAGAAGCTC
TG
GAAAAAGGACAGCAGACAAAGGCTGAAGCTGATGGTGTCCTGACTTGCTCTGTTTCACAGTTAACAGT
T
TTATCTTCAGTTGAGGAAAGGAGACTAGCTTGGGTAAAAACATTTAAACCCTGGGCTGAAATCTTTGAG
CAA
AATCAACATAAGAAAATTGTTAAAAAAAGGAGACTTGTGAAGTGCCCACCAAATACAATGCCTCCTT
TA
GATCCATCAGCCATTCTCCAGTATGGCCCTTGGAAATCTTTAAAGCAGGTTCCAGTGATTACATTTCA
G
GGTTTGCCTGGTTGTAGTCTCTCTACACTGGCAGAGTGCTCAAATCTTCAGATCCTGTCTCTCCGACGC
TGT
GGATTAACTTCCTTGCAGGGACTGAGCCACTGCACACGCCTTAAGTACATCGATGCACAGGAAAACC
AC
ATTGAAGCTATCAGTTGTGAAAATTTGGAAAATCTCTCTGTTGTTCTTCTTAATAATAATCTGCTGAC
T
TCTATTCATGGTTTTGATGGATGCACTAATCTCCAAAGCCTTGAACTCTCACATAATAAAATCACTCGA
ATC
AGTGGTTTAGAATCTTTGAAATATCTTCAAGAACTAACTGTGGACCACAATCAGTTAATTAGCACTA
AA
GGTCTTTGTGAAGCACCCACCATCGTGTACCTGGATTGCTCACATAACCATCTTACTGGCATTGACGG
C
ATTGGAAATTGTGGATTGCTCCAGATAATAAAGCTGCAGGGAAATTACCTAAGAGAGCCTCCGTCCTTA
AGA
AATCATGTTCTGCTCAGAGAGCTGCATTTGGATGACAACAGCATCTCAAGTGTGGAAGGACTTTCTT
CT
TGTTGGTTGCCTTTACTACAGTATCTAAGCATTTCACAAAACAGCTTAGCCACAATTGTGCCACTTTT
T
CATCTTGTCTCTTTGGAGAAGCTGGATGTCAGCAACAATTGTCTTTCTGATCTGACAAATGTCATGTGT
TGG
TTCAATGCATGCTACTCTCTCCGTGAGCTTTGTCTCACTGGAAACCCAGTACTCCAGGAAATAAACT
GG
AGAGATTCTATACTTAAAACATTACCTGCTCTGAGAGTCCTCAACGGTGACATGCTGAACTCTTACGC
C
AATGACCGTATTGAAGAGCACTATCATCAAGACTTAAGATGTTTGTTGGCACTTTGTCAGTACCAGCTT
CAA
GAGTTCAACTTATTACCTGAAAAGTATATCACACAGAAGAGGGACATTCTCACTCTGCATGCTGTAG
AC
AGACTCTCACAGTACTATAAAGACTTAATGAAACTCAGTCATGAATGCAGACGTGCACATGAACAAGG
G
GATGTCAATACCACTGAGAGGTCTGCAGCAGAAACCAACAAAAACCATCCAGACTTCTCAAACACTGAC
AGC
GCACTGCAAAACAAGACCCTTCATGCCCAGACTAACAGTTGTGAGGCCGATTCACCAGCCACTTCTC
CA
AACCCGTTGGACACTGTCTTCAGACCTTCTACATCACACTGTGAAGAACTGAGAGGAAGAAATCAGGA
A
AAGCTTATGGCGCACAAGAGTGAGCAGAGTAGGATCAGTAGTCGCTCCAACAGCAGAGCCTCATTCATA
GAA
ATGAAGATGGCAGATTCTCCAATGAGTAATCATCACAATGCTGAACGAAGTTCACCAACCAAGGCAG
CT
ATGGTAATCCAAGCACAATGGCGTAGTTACATTGCACACAGACAGATTAATTGCTCTGCAGAAATGCA
T
CCTACCACAACAGAACCCCTGCAAGATCCCCTCATCAATAACCAGACTACTTCTAATGAAGAAAGAAGA
AAA
ACTAATATGGATATCCAAGAACAGAGGGAGAAGGCTGCTCTTCATATTCAGGCAGTTTGGAAGGGCT
TT
ATTTTACGAAAGAAGCTGGCGACCGCCCGAAAGGCTATCAAAGATGAGGAATCTGGAGAAGAGTATGA
A
GAAATTGATTTAGAGGATTTTGAATTTGATGAGGATGCCTTGGAGAAAGACTGGCCAGCTTTAGATTCT
ACT
GGCTTCCCTTCACAAACACTGCCTCTCTCCAACCAGCTGCCCTGGCCAAAGAACTCTCGGACTTTGA
GA
CATGACGAAACTTCACCTACCATACCAGTTCGTCCAGCTCAGGCATGGCTGTGCAATGAGAAAGAAAA
T
GTGATGTCGTCCGAGTACACACAGTTAAGCAGCAGATCAGAAAGCGGAATTTTATCCTGGACACCTGAC
TCA
AAAACAAGTAGGAAGAATTTACTACAATCTGAAAAGGAAGAAAAAATTTCAGAAGAATGGGGCTTTA
AG
GATATCTCTACAGCTCAGCAAATGCTAAAGAGAGCAAAGAAAATGAAATCAAAGAAATTAAGGAAGAA
A
TTAGAACCTTCTGTGCGACTAGCATTATTCAAAAAAGCCAAAAATAAAGTTTCTGTTACAAAGTCATCA
AAG
AAGACACAGCTCAGAAGAGACAATTACTTTGAAGCACACATCTCTTCCCAAGATGAGGAGGAAGAGG
CA
GTCTCCAAGGCAACTGCTGCAAAGGAAAAGTTAGAACGGAGTCAGGAGTACACCTACCAGTGGCTTCA
T
ACACAAGTTGGCTTTCCTGAAGCAACCAGTTCCAGGAACCTGAAATGCAATCACTTTTTGCCTGAGTTA
GAT
CCAGATGTACTTAATGGTGGAAGAGTTCAACTTGTGGCAAGGCTTGTAAGCAGAGAAGACACGGATT
TA
GACCTTTTTTCCATGACCAGTGCAAGTGCTTTGTCTGTGAACAAAGACAAAAAGAGCCAGACACACAG
A
TACTCGACTGGATCCTCAAGTAAGCTATGGTTTCCTTCAGAGCTAATTTAG


Translation (1673 aa):
MEDSDDSEAKLREEIEAELDKISISSLENDEVENDSVSDTQSDSSDTDLLELPESVLHYINVIKNKSKTA
E
ELILQDVEDTDIFSDYKK
GCNHGTVTDSHMHLRTGSLPESKANAEQLMKILSVIEKEEFMRSLAPSARC
V
SVREIITPDTPMDEYILP
DEADLSFGYFEVEERCRKSFEAWQDKQQELEEKDKETLEAQNEREKRTFQE
E
DEKRQCWMRQFEVEKKHLEDLQK
QDQDKMNDELHKEEKIWKEKYRQHEEHIRNLHLKMEEERTRLSELQ
E
KEKARLFKLRYDAAVKIQATYRASVTYRKYSPIIKEQMEKKRRRAQELKEKEAKIRQKEEEKRRRLEEE
Q
RVEEEKKKKMLEERRRREREYEEKKSILRQEREEQRSKEVIRLREHAHSPLIITCALKKGDCHGKQQAI
A
HVPKGKGTIAKESVDSNSKKQEDACLAQQLNKRENTHVQQLAMKKSTGIKLKPNQAILVELKMNEKNES
L
PKLKINENLSKNQCSEQPSDQEFNAENVDQKNELENSNLKESVNEQYPWQGLESDTQTEEHVEHVREEK
V
GQETEKLFGFNQEVSAEDSKQAQGVMEETREGLAEEIEIKEMTQQGGPSDENNSSPISMQKSLPSLTPD
N
PEPVERSVTLEEDQETDLKSERIEEIPEEGVLSCDAAVINADASVHTEGEADLQDSASGKLAPSEEAGS
H
SANNLLATEEVEDSPKSEIQEALEKGQQTKAEADGVLTCSVSQLTVLSSVEERRLAWVKTFKPWAEIFE
Q
NQHKKIVKKRRLVKCPPNTMPPLDPSAILQYGPWKSLKQ
VPVITFQGLPGCSLSTLAECSNLQILSLRR
C
GLTSLQGLSHCTRLKYIDAQ
ENHIEAISCENLENLSVVLLNNNLLTSIHGFDGCTNLQSLELSHNKITR
I
SGLESLKYLQELTVDHNQLISTKGLCEAPTIVYLDCSHNHLTGIDGIGNCGLLQIIKLQGNYLREPPSL
R
NHVLLRELHLDDNSISSVEGLSSCWLPLLQYLSISQN
SLATIVPLFHLVSLEKLDVSNNCLSDLTNVMC
W
FNACYSLRELCLTGNPVLQEINW
RDSILKTLPALRVLNGDMLNSYANDRIEEHYHQDLRCLLALCQYQL
Q
EFNLLPEKYITQK
RDILTLHAVDRLSQYYKDLMKLSHECRRAHEQGDVNTTERSAAETNKNHPDFSNTD
S
ALQNKTLHAQTNSCEADSPATSPNPLDTVFRPSTSHCEELRGRNQEKLMAHKSEQSRISSRSNSRASFI
E
MKMADSPMSNHHNAERSSP
TKAAMVIQAQWRSYIAHRQINCSAEMHPTTTEPLQDPLINNQTTSNEERR
K
TNMDIQEQREKAALHIQ
AVWKGFILRKKLATARKAIKDEESGEEYEEIDLEDFEFDEDALEKDWPALDS
T
GFPSQTLPLSNQLPWPK
NSRTLRHDETSPTIPVRPAQAWLCNEKENVMSSEYTQLSSRSESGILSWTPD
S
KTSRKNLLQSEKEEKISEE
WGFKDISTAQQMLKRAKKMKSKKLRKKLEPSVRLALFKKAKNKVSVTKSS
K
KTQLRRDNYFE
AHISSQDEEEEAVSKATAAKEKLERSQEYTYQWLHTQVGFPEATSSRNLKCNHFLPEL
D
PDVLNGGRVQLV
ARLVSREDTDLDLFSMTSASALSVNKDKKSQTHRYSTGSSSKLWFPSELI



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser