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Report for CCDS48195.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48195.1 Public Homo sapiens X SLC10A3 24 110 108 CCDS HistoryNCBI Gene:8273Re-query CCDS DB by CCDS ID:48195.1Re-query CCDS DB by GeneID:8273See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48195.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369649.8 ENSP00000358663.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369649.8Link to Ensembl Protein Viewer:ENSP00000358663.4Re-query CCDS DB by Nucleotide ID:ENST00000369649Re-query CCDS DB by Protein ID:ENSP00000358663
Original member Current member NCBI NM_001142391.3 NP_001135863.1 Accepted alive Link to Nucleotide Sequence:NM_001142391.3Link to Protein Sequence:NP_001135863.1Re-query CCDS DB by Nucleotide ID:NM_001142391Re-query CCDS DB by Protein ID:NP_001135863Link to BLAST:NP_001135863.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135863.1 448 P09131-2 448 100% 0 0

Chromosomal Locations for CCDS 48195.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 154487507 154488496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 154488584 154488940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGGTGTTAATGCAGGACAAGGGCAGCTCTCAGCAGTGGCCTGGTCTGGGGGGCGAGGGTGGTGGCACAG
GTCCCTTAAGCATGCTCAGAGCTGCCCTGCTGCTCATCAGCCTGCCATGGGGGGCCCAAGGGACAGCCAG
CACCAGCCTCAGCACTGCTGGGGGTCACACCGTGCCACCGACTGGGGGCCGCTACTTGAGCATTGGAGAT
GGCTCTGTGATGGAGTTTGAGTTTCCTGAGGACAGTGAGGGCATCATCGTGATCTCCAGCCAGTACCCAG
GCCAGGCCAACAGGACGGCGCCTGGCCCCATGCTCAGGGTCACCTCCCTGGACACAGAGGTGCTGACCAT
CAAGAACCTCGTGGACGCCCATGAGGCCCCGCCCACACTGATTGAGGAGCGGAGAGACTTCTGCATCAAG
GTCTCACCTGCTGAAGACACGCCTGCCACCCTCAGCGCCGACCTGGCCCACTTCTCGGAAAACCCAATCC
TCTACCTGCTCCTGCCTCTTATCTTTGTCAACAAGTGTTCGTTTGGGTGCAAAGTGGAACTCGAGGTTCT
GAAGGGGCTCATGCAGAGCCCCCAGCCCATGCTGCTGGGCCTCCTGGGCCAGTTTCTGGTCATGCCCTTG
TACGCTTTCCTCATGGCCAAGGTCTTCATGCTGCCCAAGGCCCTGGCTCTGGGCCTCATCATCACCTGCT
CGTCGCCTGGCGGCGGGGGGAGCTACCTCTTCAGCCTCCTTCTTGGAGGGGACGTCACCCTGGCCATCTC
CATGACTTTCCTCTCTACGGTGGCTGCCACTGGCTTCTTGCCTCTGTCTTCGGCCATCTACAGCCGCCTG
CTCAGCATCCATGAGACGCTCCACGTGCCCATCTCCAAGATCCTGGGGACCCTGCTGTTCATTGCCATCC
CCATAGCCGTGGGCGTGCTGATCAAGTCCAAGCTCCCCAAGTTCTCCCAGCTGCTGCTGCAGGTCGTCAA
GCCCTTCAGCTTTGTGCTCCTCCTGGGCGGCCTCTTCCTGGCCTATCGCATGGGGGTCTTCATCCTGGCA
GGCATCCGGCTACCCATCGTACTGGTGGGTATCACGGTGCCCCTGGTTGGCCTGTTGGTGGGCTACTGCC
TAGCCACGTGTCTGAAGCTGCCAGTGGCCCAGCGGCGGACGGTCAGCATTGAGGTAGGGGTGCAGAACAG
CCTGCTGGCCTTGGCCATGCTGCAGCTATCCCTCCGCCGCCTTCAAGCTGACTATGCCTCCCAGGCCCCC
TTCATTGTGGCGCTGAGCGGCACCTCCGAGATGCTGGCCTTGGTCATTGGCCACTTCATCTACAGCAGCC
TGTTCCCAGTTCCCTGA

Translation (448 aa):
MVLMQDKGSSQQWPGLGGEGGGTGPLSMLRAALLLISLPWGAQGTASTSLSTAGGHTVPPTGGRYLSIGD
GSVMEFEFPEDSEGIIVISSQYPGQANRTAPGPMLRVTSLDTEVLTIKNLVDAHEAPPTLIEERRDFCIK
VSPAEDTPATLSADLAHFSENPILYLLLPLIFVNKCSFGCKVELEVLKGLMQSPQPMLLGLLGQFLVMPL
YAFLMAKVFMLPKALALGLIITCSSPGGGGSYLFSLLLGGDVTLAISMTFLSTVAATGFLPLSSAIYSRL
LSIHETLHVPISKILGTLLFIAIPIAVGVLIKSKLPKFSQLLLQVVKPFSFVLLLGGLFLAYRMGVFILA
GIRLPIVLVGITVPLVGLLVGYCLATCLKLPVAQRRTVSIEVGVQNSLLALAMLQLSLRRLQADYASQAP
FIVALSGTSEMLALVIGHFIYSSLFPVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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