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Report for CCDS47026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47026.1 Public Homo sapiens 4 CC2D2A 24 110 108 CCDS HistoryNCBI Gene:57545Re-query CCDS DB by CCDS ID:47026.1Re-query CCDS DB by GeneID:57545See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47026.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424120.6 ENSP00000403465.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000424120.6Link to Ensembl Protein Viewer:ENSP00000403465.1Re-query CCDS DB by Nucleotide ID:ENST00000424120Re-query CCDS DB by Protein ID:ENSP00000403465
Original member Current member EBI ENST00000503292.6 ENSP00000421809.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503292.6Link to Ensembl Protein Viewer:ENSP00000421809.1Re-query CCDS DB by Nucleotide ID:ENST00000503292Re-query CCDS DB by Protein ID:ENSP00000421809
Original member Current member NCBI NM_001080522.2 NP_001073991.2 Accepted alive Link to Nucleotide Sequence:NM_001080522.2Link to Protein Sequence:NP_001073991.2Re-query CCDS DB by Nucleotide ID:NM_001080522Re-query CCDS DB by Protein ID:NP_001073991Link to BLAST:NP_001073991.2
Original member Current member NCBI NM_001378615.1 NP_001365544.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001378615.1Link to Protein Sequence:NP_001365544.1Re-query CCDS DB by Nucleotide ID:NM_001378615Re-query CCDS DB by Protein ID:NP_001365544Link to BLAST:NP_001365544.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073991.2 1620 Q9P2K1-4 1620 100% 0 0
NP_001365544.1 1620 Q9P2K1-4 1620 100% 0 0

Chromosomal Locations for CCDS 47026.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 15475933 15475971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15478723 15478806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15480704 15480827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15502429 15502517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15502822 15502923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15510139 15510240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15511247 15511423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15514707 15514869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15515868 15516004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15516625 15516756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15527447 15527656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15528620 15528726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15533193 15533333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15536920 15537076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15537899 15538137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15540837 15541014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15550824 15550980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15553158 15553305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15555072 15555210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15557304 15557507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15559165 15559257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15560531 15560622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15563355 15563522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15567377 15567482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15567677 15567786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15569293 15569389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15570398 15570496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15574150 15574326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15579968 15580171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15586157 15586246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15587816 15587929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15589545 15589679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15596085 15596207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15597407 15597465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15599529 15599706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15601237 15601425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4863 nt):
ATGAATCCCAGGGAAGAAAAAGTAAAAATAATTACAGAGGAGTTCATTGAAAATGATGAGGATGCAGACA
TGGGAAGACAGAATAAGAACTCAAAGGTTCGAAGACAGCCAAGAAAGAAACAGCCACCAACTGCTGTCCC
CAAGGAAATGGTGTCCGAAAAATCCCACCTTGGCAACCCCCAGGAGCCTGTGCAGGAGGAGCCCAAGACC
CGCCTCCTGAGTATGACAGTCCGGAGAGGCCCACGGAGCTTACCTCCAATTCCTTCAACTTCCAGAACAG
GCTTTGCAGAATTTTCCATGAGGGGACGCATGAGGGAGAAATTGCAAGCAGCGAGGTCCAAAGCAGAAAG
TGCATTGCTGCAGGAAATCCCCACTCCTCGGCCCAGACGCTTACGAAGTCCCAGTAAGAAAGAATTGGAG
ACTGAATTTGGCACAGAGCCAGGGAAAGAGGTAGAAAGGACTCAACAAGAAGTTGACTCCCAAAGTTACT
CAAGAGTCAAGTTCCATGATTCTGCACGAAAAATCAAGCCTAAACCCCAGGTTCCACCTGGCTTCCCTTC
TGCAGAAGAGGCCTATAACTTCTTTACTTTCAACTTTGATCCCGAACCAGAAGGATCAGAGGAAAAACCA
AAAGCAAGACATAGAGCGGGAACTAATCAAGAGGAGGAGGAAGGGGAAGAAGAAGAACCACCTGCACAAG
GAGGAGGAAAGGAAATGGATGAGGAAGAACTGCTTAATGGTGATGATGCCGAGGACTTCCTATTGGGCTT
AGATCACGTGGCTGACGATTTTGTAGCAGTCAGACCTGCAGATTATGAAAGCATCCATGATCGGCTGCAG
ATGGAAAGAGAAATGCTCTTCATACCCAGTAGGCAGACAGTCCCTACATATAAAAAGCTTCCTGAGAATG
TACAGCCCAGGTTCCTGGAAGATGAAGGCCTTTACACCGGGGTAAGACCAGAGGTGGCACGCACCAATCA
GAACATCATGGAGAACAGATTGCTGATGCAGGACCCCGAAAGAAGATGGTTTGGAGATGACGGCAGGATC
CTAGCTCTGCCAAACCCCATCAAGCCATTTCCTTCAAGGCCGCCAGTACTAACACAGGAGCAGAGCATTA
AGGCAGAGCTTGAAACACTGTATAAAAAGGCTGTAAAATACGTTCACAGTAGTCAGCATGTGATCAGATC
TGGAGACCCTCCTGGAAATTTCCAACTGGACATTGATATTTCAGGGTTAATCTTCACTCATCATCCCTGT
TTTAGCCGAGAGCATGTTTTGGCAGCCAAGCTGGCCCAGTTATATGACCAGTACCTTGCAAGACACCAGA
GAAACAAGGCGAAATTTCTTACTGATAAGCTCCAAGCTTTAAGAAATGCTGTTCAGACTGGCCTTGATCC
AGAAAAACCTCATCAGTCTCTCGATACCATCCAAAAAACCATCAATGAGTATAAATCTGAAATTCGACAA
ACAAGAAAATTCCGTGATGCTGAACAAGAAAAAGATAGAACATTGCTTAAGACTATCATAAAAGTTTGGA
AAGAGATGAAATCCCTTCGAGAGTTCCAGAGATTTACAAATACTCCCTTGAAACTTGTTTTGAGAAAGGA
AAAAGCTGACCAGAAAGCAGATGAAGAAGCATATGAAGCAGAAATTCAAGCTGAAATAAGTGAACTGTTA
GAAGAGCACACGGAGGAGTACGCACAGAAGATGGAAGAATACAGAACGTCGTTACAACAGTGGAAGGCCT
GGAGGAAAGTGCAAAGGGCCAAGAAGAAGAAAAGGAAACAAGCAGCAGAAGAACATCCCGGTGATGAGAT
TGCAGAGCCGTATCCCGAGGAGGACCTTGTGAAGCCCAGCCCTCCAGAGCCCACTGATCGGGCAGTGATA
GAGCAGGAGGTGAGGGAGAGAGCAGCCCAGAGCAGGAGGAGGCCTTGGGAGCCCACGCTGGTCCCGGAGC
TAAGCCTGGCAGGAAGCGTAACACCCAATGACCAGTGCCCCAGAGCGGAGGTCTCGAGAAGGGAGGATGT
AAAGAAGCGCTCAGTGTACTTAAAAGTGCTGTTCAACAACAAGGAGGTGTCCAGGACAGTCAGTCGGCCA
CTAGGAGCAGACTTCCGAGTTCACTTTGGGCAGATTTTCAATTTGCAAATAGTCAACTGGCCGGAGAGTT
TAACACTTCAGGTCTATGAAACTGTCGGACACAGTAGTCCCACCTTGCTAGCAGAAGTGTTTCTGCCTAT
TCCTGAGACTACTGTTGTCACTGGAAGGGCTCCTACTGAAGAAGTGGAGTTTAGCAGTAATCAGCATGTG
ACACTGGACCACGAGGGAGTTGGAAGTGGAGTGCCCTTCTCATTTGAAGCTGATGGCAGTAACCAGCTGA
CTCTGATGACCTCAGGGAAAGTGTCTCATAGTGTGGCATGGGCCATTGGAGAAAACGGGATACCTTTAAT
TCCTCCATTGTCACAGCAGAACATCGGATTTCGGAGTGCTTTGAAGAAAGCAGATGCCATCTCATCTATT
GGCACATCAGGACTGACAGACATGAAAAAATTGGCCAAGTGGGCAGCAGAGTCCAAGCTCGACCCAAATG
ACCCCAACAATGCCCCTTTGATGCAGCTTATCTCGGTTGCTACCAGTGGTGAATCCTATGTCCCTGATTT
CTTTAGACTGGAGCAGCTGCAACAGGAGTTTAACTTTGTTTCAGATCAAGAATTAAATAGATCCAAACGA
TTTAGGCTTCTTCATCTTAGAAGCCAAGAGGTGCCAGAATTCCGAAATTATAAGCAAGTTCCAGTCTATG
ACCGAGAAATTATGGAAAAGGTATTCCAGGACTATGAGAAACGGTTACGAGACAGAAATGTAATAGAAAC
CAAGGAACACATAGACACCCATAGGGCCATAGTAGCCAAGTACCTCCAGCAGGTTAGAGAATCAGTGATA
AATCGTTTCTTAATTGCAAAACAATATTTTCTTCTTGCTGATATGATAGTAGAAGAAGAAGTTCCCAATA
TCAGCATTTTGGGCCTAAGCCTTTTCAAGCTGGCAGAACAAAAGCGACCACTGCGGCCAAGGAGAAAAGG
TCGGAAGAAGGTGACAGCCCAAAACCTGTCTGATGGAGACATAAAGCTGCTGGTGAACATTGTGCGAGCT
TACGACATTCCAGTGAGGAAGCCGGCAGTGAGCAAATTCCAGCAGCCGTCGAGGTCTTCAAGGATGTTCA
GTGAAAAGCATGCTGCTTCCCCAAGCACGTACAGCCCAACCCACAATGCTGACTACCCCCTCGGCCAGGT
TTTAGTACGTCCCTTTGTAGAAGTCTCTTTTCAACGAACAGTTTGCCATACGACTACGGCTGAAGGACCA
AACCCTAGCTGGAATGAAGAACTAGAACTTCCATTTAGGGCTCCTAATGGAGATTATAGCACAGCCAGTC
TGCAGTCAGTGAAAGATGTTGTGTTCATTAACATTTTTGATGAAGTACTGCATGATGTCTTAGAGGATGA
CCGTGAAAGAGGAAGTGGAATCCATACTCGTATTGAGAGACACTGGCTGGGATGTGTGAAAATGCCATTT
AGCACAATATATTTCCAAGCAAGGATTGATGGAACATTTAAAATAGATATTCCCCCAGTTCTTCTGGGCT
ACAGTAAGGAGCGAAATATGATTCTTGAGCGGGGTTTTGATTCTGTCCGAAGCTTAAGTGAAGGCTCCTA
CATTACCCTCTTTATTACCATTGAGCCCCAGCTGGTTCCTGGAGAGTCCATTCGAGAAAAGTTTGAGTCT
CAGGAAGATGAGAAATTACTTCAAGCAACTGAGAAGTTTCAAGCTGAATGTGCCTTAAAGTTTCCAAATC
GTCAGTGCCTTACAACAGTAATTGATATAAGCGGAAAAACTGTTTTTATCACACGTTATCTCAAACCTTT
AAACCCTCCTCAGGAGCTCCTTAATGTCTACCCCAATAATCTACAGGCAACTGCAGAACTGGTGGCTCGA
TATGTGTCCTTGATTCCCTTCTTGCCTGACACTGTCTCATTTGGTGGTATCTGTGACCTCTGGAGCACAT
CTGATCAATTTCTTGATCTCCTGGCAGGGGATGAAGAAGAACATGCAGTACTATTGTGTAATTACTTTCT
GTCTCTGGGTAAGAAGGCCTGGCTGTTGATGGGCAATGCTATTCCTGAGGGTCCAACTGCCTATGTGCTA
ACTTGGGAGCAAGGTCGTTATTTAATATGGAATCCCTGCAGTGGACATTTTTATGGACAATTTGATACAT
TCTGTCCCTTGAAAAATGTGGGCTGTTTAATAGGTCCTGACAATATTTGGTTTAATATTCAACGATATGA
ATCTCCACTAAGGATAAATTTTGATGTCACCAGGCCCAAGCTATGGAAATCTTTCTTTTCAAGAAGCCTT
CCATATCCTGGCCTTTCCAGTGTTCAGCCTGAAGAGCTAATTTACCAGCGCTCAGACAAAGCAGCTGCAG
CTGAGCTACAAGACAGGATTGAAAAAATACTAAAAGAAAAAATCATGGACTGGAGGCCACGCCATCTGAC
TCGGTGGAATAGGTATTGTACCTCTACTCTGCGTCACTTCTTGCCTCTGTTAGAAAAAAGTCAAGGAGAA
GATGTAGAAGATGACCACAGAGCAGAACTGCTAAAACAGCTGGGAGACTACAGGTTCTCTGGATTTCCTC
TTCACATGCCTTATTCTGAAGTGAAGCCTTTAATTGACGCTGTGTATAGTACTGGAGTACATAATATTGA
TGTTCCTAATGTTGAATTTGCTTTAGCTGTATACATACACCCATACCCCAAAAATGTTTTGTCTGTTTGG
ATCTATGTTGCCTCTCTTATACGCAACAGGTAA

Translation (1620 aa):
MNPREEKVKIITEEFIENDEDADMGRQNKNSKVRRQPRKKQPPTAVPKEMVSEKSHLGNPQEPVQEEPKT
RLLSMTVRRGPRSLPPIPSTSRTGFAEFSMRGRMREKLQAARSKAESALLQEIPTPRPRRLRSPSKKELE
TEFGTEPGKEVERTQQEVDSQSYSRVKFHDSARKIKPKPQVPPGFPSAEEAYNFFTFNFDPEPEGSEEKP
KARHRAGTNQEEEEGEEEEPPAQGGGKEMDEEELLNGDDAEDFLLGLDHVADDFVAVRPADYESIHDRLQ
MEREMLFIPSRQTVPTYKKLPENVQPRFLEDEGLYTGVRPEVARTNQNIMENRLLMQDPERRWFGDDGRI
LALPNPIKPFPSRPPVLTQEQSIKAELETLYKKAVKYVHSSQHVIRSGDPPGNFQLDIDISGLIFTHHPC
FSREHVLAAKLAQLYDQYLARHQRNKAKFLTDKLQALRNAVQTGLDPEKPHQSLDTIQKTINEYKSEIRQ
TRKFRDAEQEKDRTLLKTIIKVWKEMKSLREFQRFTNTPLKLVLRKEKADQKADEEAYEAEIQAEISELL
EEHTEEYAQKMEEYRTSLQQWKAWRKVQRAKKKKRKQAAEEHPGDEIAEPYPEEDLVKPSPPEPTDRAVI
EQEVRERAAQSRRRPWEPTLVPELSLAGSVTPNDQCPRAEVSRREDVKKRSVYLKVLFNNKEVSRTVSRP
LGADFRVHFGQIFNLQIVNWPESLTLQVYETVGHSSPTLLAEVFLPIPETTVVTGRAPTEEVEFSSNQHV
TLDHEGVGSGVPFSFEADGSNQLTLMTSGKVSHSVAWAIGENGIPLIPPLSQQNIGFRSALKKADAISSI
GTSGLTDMKKLAKWAAESKLDPNDPNNAPLMQLISVATSGESYVPDFFRLEQLQQEFNFVSDQELNRSKR
FRLLHLRSQEVPEFRNYKQVPVYDREIMEKVFQDYEKRLRDRNVIETKEHIDTHRAIVAKYLQQVRESVI
NRFLIAKQYFLLADMIVEEEVPNISILGLSLFKLAEQKRPLRPRRKGRKKVTAQNLSDGDIKLLVNIVRA
YDIPVRKPAVSKFQQPSRSSRMFSEKHAASPSTYSPTHNADYPLGQVLVRPFVEVSFQRTVCHTTTAEGP
NPSWNEELELPFRAPNGDYSTASLQSVKDVVFINIFDEVLHDVLEDDRERGSGIHTRIERHWLGCVKMPF
STIYFQARIDGTFKIDIPPVLLGYSKERNMILERGFDSVRSLSEGSYITLFITIEPQLVPGESIREKFES
QEDEKLLQATEKFQAECALKFPNRQCLTTVIDISGKTVFITRYLKPLNPPQELLNVYPNNLQATAELVAR
YVSLIPFLPDTVSFGGICDLWSTSDQFLDLLAGDEEEHAVLLCNYFLSLGKKAWLLMGNAIPEGPTAYVL
TWEQGRYLIWNPCSGHFYGQFDTFCPLKNVGCLIGPDNIWFNIQRYESPLRINFDVTRPKLWKSFFSRSL
PYPGLSSVQPEELIYQRSDKAAAAELQDRIEKILKEKIMDWRPRHLTRWNRYCTSTLRHFLPLLEKSQGE
DVEDDHRAELLKQLGDYRFSGFPLHMPYSEVKPLIDAVYSTGVHNIDVPNVEFALAVYIHPYPKNVLSVW
IYVASLIRNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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