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Report for CCDS45259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45259.1 Public Homo sapiens 15 LYSMD2 24 110 108 CCDS HistoryNCBI Gene:256586Re-query CCDS DB by CCDS ID:45259.1Re-query CCDS DB by GeneID:256586See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45259.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454181.6 ENSP00000410424.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454181.6Link to Ensembl Protein Viewer:ENSP00000410424.2Re-query CCDS DB by Nucleotide ID:ENST00000454181Re-query CCDS DB by Protein ID:ENSP00000410424
Original member Current member EBI ENST00000560491.2 ENSP00000453933.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000560491.2Link to Ensembl Protein Viewer:ENSP00000453933.1Re-query CCDS DB by Nucleotide ID:ENST00000560491Re-query CCDS DB by Protein ID:ENSP00000453933
Original member Current member NCBI NM_001143917.2 NP_001137389.1 Accepted alive Link to Nucleotide Sequence:NM_001143917.2Link to Protein Sequence:NP_001137389.1Re-query CCDS DB by Nucleotide ID:NM_001143917Re-query CCDS DB by Protein ID:NP_001137389Link to BLAST:NP_001137389.1
Original member Current member NCBI NM_001363969.2 NP_001350898.1 Accepted alive Link to Nucleotide Sequence:NM_001363969.2Link to Protein Sequence:NP_001350898.1Re-query CCDS DB by Nucleotide ID:NM_001363969Re-query CCDS DB by Protein ID:NP_001350898Link to BLAST:NP_001350898.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137389.1 124 Q8IV50-2 124 100% 0 0
NP_001350898.1 124 Q8IV50-2 124 100% 0 0

Chromosomal Locations for CCDS 45259.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 51723607 51723649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 51724790 51725121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (375 nt):
ATGGAACAGATTAAAAGGGCCAATAAACTGTTTACCAATGATTGTATATTTCTGAAGAAAACTTTGAACA
TC
CCAGTTATATCAGAGAAGCCTTTGTTGTTTAATGGACTTAACTCCATTGATTCTCCAGAAAATGAAAC
T
GCTGATAACAGTTTTTCTCAGGAAGAGGAGCCAGTGGTGGCCGGGGAAGACCTCCCTCCTCCCAGTCCT
CAA
GAATCTGATGTTCAGCCTGTGCAGCCTGAGGAAGTGTCAGCCAGAGATTTCCTGCAGAGACTTGACT
TG
CAGATTAAGTTATCAACACAGGCAGCCAAGAAGCTAAAAGAAGAGAGCAGAGATGAAGAAAGTCCCTA
T
GCAACTTCCCTCTATCACAGTTAG


Translation (124 aa):
MEQIKRANKLFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSP
Q
ESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEES
RDEESPYATSLYHS



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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