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Report for CCDS43706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43706.1 Public Homo sapiens 8 PRAG1 24 110 108 CCDS HistoryNCBI Gene:157285Re-query CCDS DB by CCDS ID:43706.1Re-query CCDS DB by GeneID:157285See the combined annotation on chromosome 8 in Sequence Viewer

Public Note for CCDS 43706.1
The coding region has been updated to add two internal 6-nt sequences that were included in the update of the GRCh37 reference genome assembly to the GRCh38 assembly. The update results in a protein that is 4 aa longer.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 43706.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000622241.1 ENSP00000479068.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622241.1Link to Ensembl Protein Viewer:ENSP00000479068.1Re-query CCDS DB by Nucleotide ID:ENST00000622241Re-query CCDS DB by Protein ID:ENSP00000479068
Original member Current member EBI ENST00000615670.5 ENSP00000481109.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000615670.5Link to Ensembl Protein Viewer:ENSP00000481109.1Re-query CCDS DB by Nucleotide ID:ENST00000615670Re-query CCDS DB by Protein ID:ENSP00000481109
Original member Current member NCBI NM_001080826.3 NP_001074295.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080826.3Link to Protein Sequence:NP_001074295.2Re-query CCDS DB by Nucleotide ID:NM_001080826Re-query CCDS DB by Protein ID:NP_001074295Link to BLAST:NP_001074295.2
Original member Current member NCBI NM_001369759.1 NP_001356688.1 Accepted alive Link to Nucleotide Sequence:NM_001369759.1Link to Protein Sequence:NP_001356688.1Re-query CCDS DB by Nucleotide ID:NM_001369759Re-query CCDS DB by Protein ID:NP_001356688Link to BLAST:NP_001356688.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074295.2 1406 Q86YV5 1406 100% 0 0
NP_001356688.1 1406 Q86YV5 1406 100% 0 0

Chromosomal Locations for CCDS 43706.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 8318154 8319302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 8327710 8328461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 8339478 8339635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 8376247 8378078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 8381418 8381747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4221 nt):
ATGCACCAGACCCTCTGCCTGAACCCCGAGAGCCTGAAAATGTCTGCGTGCAGTGACTTTGTGGAGCACA
TCTGGAAACCCGGGTCCTGCAAGAACTGCTTCTGCCTGCGGAGCGACCACCAGCTGGTGGCCGGCCCTCC
CCAGCCCAGAGCGGGCAGCCTGCCCCCTCCACCGCGCCTGCCTCCCAGGCCTGAGAACTGCCGCCTGGAA
GATGAAGGTGTGAACAGCTCACCTTACTCCAAGCCCACAATTGCCGTGAAGCCCACCATGATGAGCTCCG
AGGCCTCTGATGTGTGGACAGAGGCCAACCTGAGTGCCGAAGTCTCGCAGGTCATCTGGAGACGAGCCCC
TGGCAAGCTCCCCCTCCCGAAGCAGGAGGATGCCCCCGTCGTCTACCTGGGCAGCTTCCGAGGTGTACAG
AAGCCTGCTGGTCCCTCTACCTCCCCTGATGGCAATTCTCGCTGTCCCCCAGCTTACACCATGGTCGGCC
TGCACAACCTTGAGCCCCGCGGCGAGAGGAACATTGCCTTCCACCCGGTGAGCTTCCCGGAGGAGAAGGC
TGTGCACAAAGAAAAACCCTCATTTCCTTACCAAGACCGGCCCTCCACCCAGGAGAGCTTCCGCCAGAAA
CTGGCTGCCTTTGCTGGGACCACATCTGGCTGTCACCAGGGCCCTGGGCCCCTGCGGGAATCCCTGCCCT
CGGAGGATGACAGTGATCAAAGGTGCTCGCCCTCCGGGGACAGCGAGGGTGGAGAGTACTGCTCCATCCT
GGACTGCTGCCCTGGGAGCCCTGTTGCCAAGGCTGCCTCCCAGACTGCAGGTTCCCGGGGCAGGCATGGT
GGCAGGGACTGCTCACCCACGTGCTGGGAGCAGGGGAAGTGTTCCGGGCCCGCAGAGCAGGAGAAGCGGG
GCCCGAGCTTCCCCAAGGAGTGCTGTAGCCAGGGCCCCACTGCCCACCCATCCTGCCTGGGCCCCAAGAA
ACTGTCCCTCACCTCGGAGGCTGCCATTTCTTCCGACGGCCTCTCTTGTGGCAGCGGCAGCGGCAGCGGC
AGCGGCGCCAGTAGCCCCTTCGTCCCCCACCTCGAGAGTGATTACTGCTCCCTCATGAAGGAACCTGCCC
CAGAGAAGCAGCAGGACCCTGGCTGCCCAGGGGTGACCCCTAGCAGATGCCTTGGGCTGACGGGGGAGCC
CCAGCCCCCGGCCCACCCCCGGGAGGCTACACAGCCTGAACCCATCTATGCTGAGAGCACCAAGAGGAAG
AAGGCAGCTCCGGTGCCTTCCAAGTCACAGGCCAAGATAGAACATGCAGCTGCTGCCCAGGGCCAAGGCC
AGGTATGCACAGGTAATGCCTGGGCCCAGAAAGCAGCATCTGGCTGGGGCCGGGACAGCCCAGACCCAAC
TCCCCAGGTGTCAGCCACCATCACAGTCATGGCGGCCCACCCGGAAGAGGACCATCGGACGATCTACCTG
AGCAGCCCTGACTCTGCAGTGGGGGTGCAGTGGCCACGAGGGCCTGTGAGCCAGAACTCCGAGGTAGGTG
AAGAGGAGACTTCGGCTGGGCAGGGGCTGAGCTCCAGGGAAAGCCATGCTCACAGTGCCAGCGAGAGCAA
GCCCAAGGAGAGGCCCGCCATTCCCCCCAAGTTGTCCAAGAGTAGCCCTGTAGGGTCCCCGGTGTCACCG
TCTGCTGGAGGGCCCCCAGTGTCACCGCTGGCTGACCTTAGTGATGGGAGCTCTGGCGGCAGCAGCATTG
GGCCCCAGCCTCCATCCCAAGGTCCTGCTGACCCCGCTCCTTCCTGCCGGACCAACGGTGTCGCTATCAG
TGACCCATCCAGGTGTCCCCAGCCTGCCGCCTCGTCAGCCTCGGAACAGAGGCGGCCCAGGTTCCAGGCA
GGCACCTGGAGTCGTCAGTGCCGGATAGAGGAAGAAGAGGAGGTGGAGCAGGAATTGCTGAGTCACAGCT
GGGGAAGAGAGACCAAAAATGGCCCCACGGACCATTCAAACTCCACGACCTGGCACCGTCTCCACCCCAC
AGATGGCTCCTCTGGGCAGAACAGCAAAGTTGGGACCGGGATGAGCAAATCCGCCTCTTTTGCCTTTGAG
TTCCCCAAGGACAGAAGTGGGATTGAGACATTCTCACCTCCTCCTCCGCCTCCAAAGTCGCGGCACCTTC
TAAAAATGAACAAGAGCAGCTCTGATTTGGAAAAAGTGAGCCAGGGCTCTGCAGAAAGCCTCAGCCCATC
CTTCAGGGGTGTCCACGTCAGCTTCACCACCGGCTCCACGGACAGCCTGGCCTCAGACTCTAGGACCTGC
AGCGATGGAGGTCCCTCGTCTGAGCTGGCTCACTCGCCCACCAACAGCGGGAAGAAGCTCTTTGCTCCCG
TTCCGTTTCCTTCAGGCTCCACTGAGGACGTGTCCCCCAGTGGCCCCCAGCAGCCCCCTCCACTCCCCCA
GAAAAAGATAGTGAGCCGGGCAGCCTCTTCACCGGATGGCTTCTTCTGGACCCAAGGCTCCCCCAAGCCC
GGAACAGCAAGCCCCAAGCTGAACCTAAGCCACTCGGAAACCAACGTCCACGACGAATCTCACTTTAGCT
ATTCGTTGAGCCCCGGGAACCGCCACCATCCTGTCTTCTCCTCTTCCGATCCTCTGGAGAAAGCTTTCAA
AGGCAGTGGCCACTGGCTTCCGGCAGCAGGGCTGGCGGGCAACAGAGGCGGCTGCGGGAGCCCTGGCCTC
CAGTGCAAAGGGGCCCCCTCCGCCTCATCCTCCCAGCTGAGCGTGTCCAGTCAAGCCTCCACCGGGAGCA
CCCAGCTTCAGCTGCACGGTCTCCTGAGCAACATCAGCAGCAAGGAGGGCACCTATGCCAAGCTGGGGGG
ACTCTACACCCAGTCCCTGGCCCGCCTTGTAGCCAAATGTGAGGACCTCTTCATGGGCGGCCAGAAAAAG
GAGCTCCACTTCAATGAGAATAACTGGTCGCTCTTCAAGCTGACTTGTAACAAGCCCTGCTGTGACTCGG
GGGATGCCATTTATTACTGTGCCACCTGCTCTGAGGACCCCGGCAGCACCTATGCTGTGAAAATCTGCAA
AGCCCCTGAGCCCAAAACAGTCTCCTACTGCAGCCCGTCCGTGCCCGTGCACTTTAACATCCAGCAGGAC
TGCGGCCACTTCGTCGCCTCGGTGCCGTCCAGCATGCTCAGCTCCCCCGACGCGCCCAAGGACCCTGTGC
CTGCCCTGCCCACACACCCCCCTGCCCAGGAGCAGGACTGCGTGGTGGTCATCACCCGAGAGGTGCCACA
TCAGACCGCCTCCGACTTCGTGCGGGACTCGGCGGCCAGCCACCAGGCGGAGCCCGAGGCGTACGAGCGG
CGCGTGTGCTTCCTGCTTCTGCAACTCTGCAACGGGCTGGAGCACCTGAAGGAGCACGGGATCATCCACC
GGGACCTGTGCCTGGAGAACCTGCTGCTGGTGCACTGCACCCTCCAGGCCGGCCCCGGGCCCGCCCCCGC
CCCCGCCCCGGCTCCCGCCCCCGCCGCCGCCGCGCCTCCCTGCTCCTCTGCCGCCCCGCCTGCTGGTGGC
ACTCTCAGCCCCGCAGCCGGCCCCGCCTCCCCGGAAGGGCCCCGGGAGAAGCAGCTGCCCCGGCTCATCA
TCAGCAACTTTTTGAAGGCCAAGCAGAAGCCGGGCGGCACCCCAAACCTGCAGCAGAAGAAGAGCCAGGC
CCGGCTGGCCCCCGAGATCGTGTCTGCTTCCCAGTACCGCAAGTTCGATGAGTTCCAGACAGGCATCCTC
ATCTACGAGCTGCTGCACCAACCCAACCCGTTCGAGGTGCGCGCCCAGCTGCGGGAGAGAGACTACCGGC
AGGAGGACCTGCCGCCGCTGCCCGCGCTGTCCCTCTACTCACCCGGCCTGCAGCAGCTGGCACATCTGCT
ACTGGAGGCCGACCCCATCAAGCGTATCCGCATCGGCGAGGCCAAGCGCGTGCTGCAGTGCCTGCTGTGG
GGGCCTCGGCGCGAGCTGGTGCAGCAGCCGGGCACCTCGGAGGAGGCGCTGTGCGGCACGCTGCACAACT
GGATCGACATGAAGCGGGCCCTGATGATGATGAAGTTTGCGGAGAAGGCGGTGGATCGCAGGCGGGGCGT
GGAGCTGGAGGACTGGCTTTGCTGCCAGTACCTGGCGTCTGCGGAGCCCGGGGCCCTCTTACAGTCGCTG
AAGCTCCTGCAGCTTCTGTGA

Translation (1406 aa):
MHQTLCLNPESLKMSACSDFVEHIWKPGSCKNCFCLRSDHQLVAGPPQPRAGSLPPPPRLPPRPENCRLE
DEGVNSSPYSKPTIAVKPTMMSSEASDVWTEANLSAEVSQVIWRRAPGKLPLPKQEDAPVVYLGSFRGVQ
KPAGPSTSPDGNSRCPPAYTMVGLHNLEPRGERNIAFHPVSFPEEKAVHKEKPSFPYQDRPSTQESFRQK
LAAFAGTTSGCHQGPGPLRESLPSEDDSDQRCSPSGDSEGGEYCSILDCCPGSPVAKAASQTAGSRGRHG
GRDCSPTCWEQGKCSGPAEQEKRGPSFPKECCSQGPTAHPSCLGPKKLSLTSEAAISSDGLSCGSGSGSG
SGASSPFVPHLESDYCSLMKEPAPEKQQDPGCPGVTPSRCLGLTGEPQPPAHPREATQPEPIYAESTKRK
KAAPVPSKSQAKIEHAAAAQGQGQVCTGNAWAQKAASGWGRDSPDPTPQVSATITVMAAHPEEDHRTIYL
SSPDSAVGVQWPRGPVSQNSEVGEEETSAGQGLSSRESHAHSASESKPKERPAIPPKLSKSSPVGSPVSP
SAGGPPVSPLADLSDGSSGGSSIGPQPPSQGPADPAPSCRTNGVAISDPSRCPQPAASSASEQRRPRFQA
GTWSRQCRIEEEEEVEQELLSHSWGRETKNGPTDHSNSTTWHRLHPTDGSSGQNSKVGTGMSKSASFAFE
FPKDRSGIETFSPPPPPPKSRHLLKMNKSSSDLEKVSQGSAESLSPSFRGVHVSFTTGSTDSLASDSRTC
SDGGPSSELAHSPTNSGKKLFAPVPFPSGSTEDVSPSGPQQPPPLPQKKIVSRAASSPDGFFWTQGSPKP
GTASPKLNLSHSETNVHDESHFSYSLSPGNRHHPVFSSSDPLEKAFKGSGHWLPAAGLAGNRGGCGSPGL
QCKGAPSASSSQLSVSSQASTGSTQLQLHGLLSNISSKEGTYAKLGGLYTQSLARLVAKCEDLFMGGQKK
ELHFNENNWSLFKLTCNKPCCDSGDAIYYCATCSEDPGSTYAVKICKAPEPKTVSYCSPSVPVHFNIQQD
CGHFVASVPSSMLSSPDAPKDPVPALPTHPPAQEQDCVVVITREVPHQTASDFVRDSAASHQAEPEAYER
RVCFLLLQLCNGLEHLKEHGIIHRDLCLENLLLVHCTLQAGPGPAPAPAPAPAPAAAAPPCSSAAPPAGG
TLSPAAGPASPEGPREKQLPRLIISNFLKAKQKPGGTPNLQQKKSQARLAPEIVSASQYRKFDEFQTGIL
IYELLHQPNPFEVRAQLRERDYRQEDLPPLPALSLYSPGLQQLAHLLLEADPIKRIRIGEAKRVLQCLLW
GPRRELVQQPGTSEEALCGTLHNWIDMKRALMMMKFAEKAVDRRRGVELEDWLCCQYLASAEPGALLQSL
KLLQLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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