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Report for CCDS43302.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43302.1 Public Homo sapiens 5 OTULIN 24 110 108 CCDS HistoryNCBI Gene:90268Re-query CCDS DB by CCDS ID:43302.1Re-query CCDS DB by GeneID:90268See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43302.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000284274.5 ENSP00000284274.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000284274.5Link to Ensembl Protein Viewer:ENSP00000284274.4Re-query CCDS DB by Nucleotide ID:ENST00000284274Re-query CCDS DB by Protein ID:ENSP00000284274
Original member Current member NCBI NM_138348.6 NP_612357.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138348.6Link to Protein Sequence:NP_612357.4Re-query CCDS DB by Nucleotide ID:NM_138348Re-query CCDS DB by Protein ID:NP_612357Link to BLAST:NP_612357.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612357.4 352 Q96BN8 352 100% 0 0

Chromosomal Locations for CCDS 43302.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 14664826 14664977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 14673642 14673718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 14678681 14678775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 14681464 14681607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 14687521 14687646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 14690039 14690308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 14692854 14693048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGAGTCGGGGGACTATGCCCCAGCCCGAAGCGTGGCCAGGCGCGAGCTGCGCCGAGACGCCGGCGCGGG
AGGCGGCGGCCACGGCGCGGGACGGCGGGAAGGCGGCGGCCAGCGGGCAGCCGCGGCCCGAGATGCAGTG
CCCGGCCGAGCATGAGGAGGACATGTACCGTGCTGCAGATGAAATAGAAAAGGAGAAAGAATTGCTTATA
CATGAAAGAGGGGCATCAGAACCGAGATTAAGCGTAGCTCCTGAAATGGATATCATGGACTACTGCAAAA
AAGAATGGAGAGGAAATACACAGAAAGCAACGTGTATGAAAATGGGCTATGAAGAGGTTTCTCAGAAGTT
CACCTCCATACGGCGAGTCCGTGGTGATAATTACTGTGCACTGAGGGCCACGCTGTTCCAGGCCATGAGC
CAGGCTGTGGGGCTGCCGCCCTGGCTGCAGGACCCGGAGCTCATGCTGTTACCAGAAAAACTCATAAGCA
AATACAACTGGATCAAGCAATGGAAACTTGGACTGAAATTTGATGGGAAGAATGAGGACCTGGTTGATAA
AATTAAAGAGTCCCTTACTCTGCTGAGGAAGAAGTGGGCAGGCTTGGCTGAAATGAGAACTGCTGAAGCA
AGACAGATAGCTTGTGATGAACTATTCACAAATGAGGCGGAGGAATATAGCCTCTATGAAGCTGTAAAAT
TTCTAATGCTAAACAGAGCCATTGAACTATATAATGATAAAGAGAAAGGAAAGGAAGTACCATTTTTCTC
TGTGCTTCTGTTTGCTCGGGACACATCAAATGACCCAGGACAGCTTCTGAGGAACCACCTCAACCAGGTG
GGACACACTGGTGGTCTTGAACAGGTTGAAATGTTCCTTCTTGCCTATGCTGTGCGCCACACCATCCAGG
TGTACCGGCTCTCCAAGTACAACACGGAAGAATTCATCACAGTCTACCCCACCGACCCACCCAAGGACTG
GCCAGTGGTAACGCTCATTGCTGAGGACGATCGGCACTATAACATCCCCGTCAGAGTGTGTGAGGAGACC
AGTCTATGA

Translation (352 aa):
MSRGTMPQPEAWPGASCAETPAREAAATARDGGKAAASGQPRPEMQCPAEHEEDMYRAADEIEKEKELLI
HERGASEPRLSVAPEMDIMDYCKKEWRGNTQKATCMKMGYEEVSQKFTSIRRVRGDNYCALRATLFQAMS
QAVGLPPWLQDPELMLLPEKLISKYNWIKQWKLGLKFDGKNEDLVDKIKESLTLLRKKWAGLAEMRTAEA
RQIACDELFTNEAEEYSLYEAVKFLMLNRAIELYNDKEKGKEVPFFSVLLFARDTSNDPGQLLRNHLNQV
GHTGGLEQVEMFLLAYAVRHTIQVYRLSKYNTEEFITVYPTDPPKDWPVVTLIAEDDRHYNIPVRVCEET
SL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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