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Report for CCDS42805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42805.1 Public Homo sapiens 2 PARD3B 24 110 108 CCDS HistoryNCBI Gene:117583Re-query CCDS DB by CCDS ID:42805.1Re-query CCDS DB by GeneID:117583See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42805.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000351153.5 ENSP00000317261.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000351153.5Link to Ensembl Protein Viewer:ENSP00000317261.2Re-query CCDS DB by Nucleotide ID:ENST00000351153Re-query CCDS DB by Protein ID:ENSP00000317261
Original member Current member NCBI NM_057177.7 NP_476518.4 Accepted alive Link to Nucleotide Sequence:NM_057177.7Link to Protein Sequence:NP_476518.4Re-query CCDS DB by Nucleotide ID:NM_057177Re-query CCDS DB by Protein ID:NP_476518Link to BLAST:NP_476518.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_476518.4 1136 Q8TEW8-6 1136 100% 0 0

Chromosomal Locations for CCDS 42805.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 204546000 204546119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 204686181 204686282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 204965152 204965323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205047581 205047690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205104426 205104514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205113491 205113577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205118921 205119046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205121591 205121949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205124327 205124466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205125609 205125737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205158722 205158907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205172211 205172381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205176445 205176577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205185764 205185863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205193205 205193320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205245778 205245822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205301464 205301701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205401013 205401123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205440370 205440672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205499896 205500031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205553324 205553403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 205615456 205615813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3411 nt):
ATGAAAGTGACCGTGTGCTTCGGCAGGACGGGCATCGTGGTGCCCTGCAAGGAGGGCCAGCTGCGCGTCG
GCGAGCTCACCCAGCAGGCGCTGCAGCGGTACCTGAAGACCCGGGAGAAGGGTCCTGGTTACTGGGTGAA
GATTCATCACTTAGAATATACAGATGGAGGAATCCTGGATCCAGATGATGTCTTGGCAGATGTTGTTGAA
GATAAAGACAAGCTGATTGCTGTGTTTGAAGAACAAGAACCACTCCACAAGATTGAGAGCCCCAGTGGAA
ACCCTGCAGATCGGCAGAGCCCAGATGCTTTTGAGACAGAAGTGGCCGCCCAACTGGCCGCATTTAAGCC
AATTGGTGGGGAGATTGAAGTAACCCCTTCTGCTCTAAAACTAGGCACTCCACTGCTGGTGAGGAGAAGC
AGTGACCCAGTGCCAGGCCCACCTGCTGATACCCAGCCAAGCGCTTCACACCCTGGTGGCCAGAGTCTGA
AACTGGTTGTTCCAGATTCCACGCAGAACTTGGAAGACAGAGAAGTTTTGAATGGTGTACAGACAGAACT
ACTAACTTCGCCAAGAACTAAGGACACATTGAGTGATATGACAAGAACAGTGGAGATTTCTGGGGAAGGA
GGCCCATTGGGAATACATGTAGTGCCCTTCTTTTCATCTCTGAGTGGAAGGATTCTAGGACTCTTCATCC
GAGGCATTGAAGACAACAGCAGGTCCAAGCGGGAGGGACTATTTCACGAAAATGAATGTATTGTAAAAAT
CAACAATGTGGATCTCGTAGACAAAACCTTTGCTCAGGCTCAAGATGTCTTCCGCCAGGCAATGAAATCT
CCAAGTGTGCTCCTCCACGTGCTTCCTCCACAAAACCGTGAACAGTATGAAAAGTCAGTCATTGGCTCTC
TTAACATTTTTGGTAATAATGATGGCGTTTTGAAAACCAAAGTGCCGCCTCCTGTCCATGGAAAATCGGG
ACTAAAGACAGCAAATCTCACAGGAACCGATAGTCCTGAAACAGATGCATCAGCTTCCCTGCAACAAAAC
AAGAGTCCCCGAGTACCAAGGCTGGGAGGAAAACCATCCTCTCCCTCACTCTCGCCTCTCATGGGATTTG
GCAGCAATAAAAATGCAAAGAAAATTAAGATTGACCTAAAGAAAGGCCCTGAAGGACTTGGTTTCACTGT
GGTTACCAGAGACTCTTCCATACATGGTCCCGGTCCCATTTTTGTAAAAAACATTTTACCAAAGGGAGCA
GCAATAAAAGATGGCCGCCTACAATCAGGGGACAGAATTTTGGAGGTAAATGGGAGAGATGTCACCGGAC
GAACCCAGGAAGAGCTTGTGGCCATGCTCAGGAGCACCAAGCAGGGGGAGACAGCATCGCTGGTCATTGC
CCGCCAAGAAGGACATTTTCTGCCCCGAGAGTTGAAAGGAGAACCTGACTGCTGTGCACTCTCTCTGGAG
ACAAGCGAGCAGCTCACCTTTGAGATCCCCCTGAATGATTCAGGTTCTGCTGGCCTCGGGGTGAGCTTAA
AAGGGAACAAATCCAGAGAAACTGGAACAGACTTGGGGATTTTTATCAAATCCATCATTCATGGAGGCGC
TGCTTTTAAGGATGGTCGTCTGCGAATGAATGACCAGCTGATTGCAGTTAATGGGGAATCTCTTTTGGGA
AAGTCCAACCACGAAGCTATGGAAACACTTAGGCGGTCAATGTCCATGGAGGGAAACATCCGAGGGATGA
TCCAGTTGGTGATTCTGAGGAGGCCAGAGAGACCAATGGAGGATCCTGCAGAGTGTGGGGCATTTTCCAA
GCCATGCTTTGAGAACTGTCAAAATGCTGTAACCACCTCTAGGCGAAATGATAATAGTATCCTGCATCCA
CTTGGCACTTGCAGTCCACAAGACAAACAGAAAGGTCTATTGCTGCCCAATGACGGATGGGCCGAGAGTG
AAGTTCCACCTTCTCCAACACCACATTCTGCTCTGGGATTGGGCCTCGAAGATTACAGCCACAGCTCTGG
GGTGGATTCAGCAGTATATTTTCCAGATCAGCACATCAACTTCAGATCTGTGACACCGGCCAGGCAGCCT
GAATCAATTAATTTGAAAGCCTCGAAGAGCATGGACCTTGTGCCAGATGAAAGCAAGGTTCACTCATTGG
CTGGACAAAAATCGGACGGTCTGTCTGATAAGAGCTCTCACTCTGGCCAAGGAGCTCTGAATTGTGAGTC
TGCCCCTCAGGGGAATTCGGAGCTAGAGGACATGGAAAATAAAGCCAGGAAAGTCAAAAAAACGAAAGAG
AAGGAGAAGAAAAAGGAAAAGGGCAAATTGAAAGTCAAGGAGAAAAAGCGCAAAGAGGAGAATGAAGATC
CAGAAAGGAAAATAAAGAAGAAGGGCTTCGGCGCCATGCTGAGATTTGGAAAGAAGAAAGAGGATAAGGG
TGGAAAGGCTGAGCAGAAAGGTACTCTGAAACATGGTGGCCTGAGAGAAGAAGAGCTGGAGAAAATGAAA
GAAGAGCGTGAAAGGATTGGAGCAAAACATCAGGAGCTAAGGGAAAAGCAGGCAAGAGGTCTTCTTGATT
ATGCTACTGGTGCAATTGGATCAGTGTATGATATGGATGATGATGAAATGGACCCCAATTATGCCAGAGT
GAACCACTTTCGGGAACCATGCACATCAGCAAATGTCTTTAGATCTCCATCTCCCCCTCGAGCTGGACCA
TTTGGTTACCCTCGGGATGGCCATCCACTGTCTCCAGAAAGAGACCACTTAGAGGGTCTCTATGCCAAGG
TCAACAAGCCATACCATCCACTGGTTCCAGCTGACAGTGGCCGTCCTACGGGTGGAAGCACTGACCGTAT
CCAGAAGTTGCGGAAAGAGTATTATCAGGCTCGGAGGGAAGGTTTCCCTTTATATGAAGACGACGAAGGA
AGAGCAAGGCCATCTGAGTATGACCTACTCTGGGTGCCTGGAAGGGGTCCAGATGGGAATGCACACAACC
TCCGCTTTGAAGGGATGGAGAGGCAGTACGCATCCTTACCCAGGGGAGGACCCGCAGATCCTGTAGACTA
TCTGCCAGCAGCACCTCGGGGGCTCTACAAGGAAAGGGAGCTTCCCTATTATCCAGGGGCTCATCCTATG
CACCCTCCCAAAGGGAGCTATCCCCGCCCCACAGAGCTCAGGGTGGCAGATCTCCGGTATCCTCAGCACT
ACCCACCCCCGCCAGCTCCCCAGCACAAAGGACCCTTTCGACAAGACGTTCCGCCTTCCCCTCCCCAGCA
CCAAAGAATGCCAGCCTATCAGGAAACAGGCAGACCAGGGCCCCGTGGGGGCAGCCCAGACCAGTACCCT
TACCGAACCCAGGATTCCCGGCAGAAGAACCCCATGACTGCAGCCGTATAG

Translation (1136 aa):
MKVTVCFGRTGIVVPCKEGQLRVGELTQQALQRYLKTREKGPGYWVKIHHLEYTDGGILDPDDVLADVVE
DKDKLIAVFEEQEPLHKIESPSGNPADRQSPDAFETEVAAQLAAFKPIGGEIEVTPSALKLGTPLLVRRS
SDPVPGPPADTQPSASHPGGQSLKLVVPDSTQNLEDREVLNGVQTELLTSPRTKDTLSDMTRTVEISGEG
GPLGIHVVPFFSSLSGRILGLFIRGIEDNSRSKREGLFHENECIVKINNVDLVDKTFAQAQDVFRQAMKS
PSVLLHVLPPQNREQYEKSVIGSLNIFGNNDGVLKTKVPPPVHGKSGLKTANLTGTDSPETDASASLQQN
KSPRVPRLGGKPSSPSLSPLMGFGSNKNAKKIKIDLKKGPEGLGFTVVTRDSSIHGPGPIFVKNILPKGA
AIKDGRLQSGDRILEVNGRDVTGRTQEELVAMLRSTKQGETASLVIARQEGHFLPRELKGEPDCCALSLE
TSEQLTFEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGESLLG
KSNHEAMETLRRSMSMEGNIRGMIQLVILRRPERPMEDPAECGAFSKPCFENCQNAVTTSRRNDNSILHP
LGTCSPQDKQKGLLLPNDGWAESEVPPSPTPHSALGLGLEDYSHSSGVDSAVYFPDQHINFRSVTPARQP
ESINLKASKSMDLVPDESKVHSLAGQKSDGLSDKSSHSGQGALNCESAPQGNSELEDMENKARKVKKTKE
KEKKKEKGKLKVKEKKRKEENEDPERKIKKKGFGAMLRFGKKKEDKGGKAEQKGTLKHGGLREEELEKMK
EERERIGAKHQELREKQARGLLDYATGAIGSVYDMDDDEMDPNYARVNHFREPCTSANVFRSPSPPRAGP
FGYPRDGHPLSPERDHLEGLYAKVNKPYHPLVPADSGRPTGGSTDRIQKLRKEYYQARREGFPLYEDDEG
RARPSEYDLLWVPGRGPDGNAHNLRFEGMERQYASLPRGGPADPVDYLPAAPRGLYKERELPYYPGAHPM
HPPKGSYPRPTELRVADLRYPQHYPPPPAPQHKGPFRQDVPPSPPQHQRMPAYQETGRPGPRGGSPDQYP
YRTQDSRQKNPMTAAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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