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Report for CCDS42290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42290.1 Public Homo sapiens 17 GIT1 24 110 108 CCDS HistoryNCBI Gene:28964Re-query CCDS DB by CCDS ID:42290.1Re-query CCDS DB by GeneID:28964See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42290.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394869.7 ENSP00000378338.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394869.7Link to Ensembl Protein Viewer:ENSP00000378338.3Re-query CCDS DB by Nucleotide ID:ENST00000394869Re-query CCDS DB by Protein ID:ENSP00000378338
Original member Current member NCBI NM_001085454.2 NP_001078923.1 Accepted alive Link to Nucleotide Sequence:NM_001085454.2Link to Protein Sequence:NP_001078923.1Re-query CCDS DB by Nucleotide ID:NM_001085454Re-query CCDS DB by Protein ID:NP_001078923Link to BLAST:NP_001078923.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078923.1 770 Q9Y2X7-3 770 100% 0 0

Chromosomal Locations for CCDS 42290.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29574702 29574914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29575079 29575142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29575288 29575470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29575630 29575703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29575812 29575898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29576078 29576131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29576220 29576450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29576522 29576674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29576863 29576996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29577136 29577247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29577645 29577742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29578299 29578371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29578731 29578779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29578962 29578988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29581338 29581380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29581742 29581836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29581927 29582144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29582698 29582803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29582925 29583037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29583483 29583616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29589327 29589378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2313 nt):
ATGTCCCGAAAGGGGCCGCGAGCGGAGGTGTGTGCGGACTGCAGCGCCCCGGACCCTGGCTGGGCATCCA
TCAGCAGGGGTGTGCTGGTGTGTGACGAGTGCTGCAGCGTGCACCGGAGCCTGGGACGCCACATCTCCAT
TGTCAAGCACCTTCGCCACAGCGCCTGGCCTCCCACGCTGCTGCAGATGGTGCACACGCTTGCCAGCAAC
GGGGCCAACTCCATCTGGGAGCACTCCCTGCTGGACCCCGCACAAGTGCAGAGCGGCCGGCGTAAAGCCA
ACCCCCAAGACAAAGTCCACCCCATCAAGTCAGAGTTCATCAGGGCCAAGTACCAGATGCTGGCATTTGT
GCACAAGCTTCCCTGCCGGGACGATGATGGAGTCACCGCCAAAGACCTCAGCAAGCAACTACACTCGAGC
GTGCGGACAGGCAACCTGGAGACATGTCTGCGCCTGCTCTCCCTGGGTGCCCAGGCCAACTTCTTCCACC
CAGAGAAGGGCACCACACCTCTGCACGTGGCTGCCAAGGCAGGACAGACACTGCAGGCCGAGCTGCTTGT
AGTGTATGGGGCTGACCCTGGCTCCCCTGATGTTAATGGCCGCACACCCATTGACTATGCCAGGCAGGCG
GGGCACCATGAGCTGGCGGAAAGGCTGGTTGAGTGCCAATATGAGCTCACTGACCGGCTGGCCTTCTACC
TCTGTGGACGCAAGCCGGATCACAAGAATGGGCATTACATCATCCCACAGATGGCTGACAGATCTCGGCA
AAAGTGCATGTCTCAGAGCCTTGACTTATCCGAATTGGCCAAAGCTGCTAAGAAGAAGCTGCAGGCGCTC
AGCAACCGGCTTTTTGAGGAACTCGCCATGGACGTGTATGACGAGGTGGATCGAAGAGAAAATGATGCAG
TGTGGCTGGCTACCCAAAACCACAGCACTCTGGTGACAGAGCGCAGTGCCGTGCCCTTCCTGCCTGTTAA
CCCGGAATACTCAGCCACGCGGAATCAGGGGCGACAAAAGCTGGCCCGCTTTAATGCCCGAGAGTTTGCC
ACCTTGATCATCGACATTCTCAGTGAGGCCAAGCGGAGACAGCAGGGCAAGAGCCTGAGCAGCCCCACAG
ACAACCTCGAGCTGTCTCTGCGGAGCCAGAGTGACCTCGACGACCAACACGACTACGACAGCGTGGCCTC
TGACGAGGACACAGACCAGGAGCCCCTGCGCAGCACCGGCGCCACTCGGAGCAACCGGGCCCGGAGCATG
GACTCCTCGGACTTGTCTGACGGGGCTGTGACGCTGCAGGAGTACCTGGAGCTGAAGAAGGCCCTGGCTA
CATCGGAGGCAAAGGTGCAGCAGCTCATGAAGGTCAACAGTAGCCTGAGCGACGAGCTCCGGAGGCTGCA
GCGAGAGATCCACAAGCTGCAGGCGGAGAACCTGCAGCTCCGGCAGCCTCCAGGGCCGGTGCCCACACCT
CCACTCCCCAGTGAACGGGCGGAACACACACCCATGGCGCCAGGCGGGAGCACACACCGCAGGGATCGCC
AGGCCTTTTCCATGTATGAACCTGGCTCTGCCCTGAAGCCCTTTGGGGGCCCCCCTGGGGACGAGCTCAC
TACGCGGCTGCAGCCTTTCCACAGCACTGAGCTAGAGGACGACGCCATCTATTCAGTGCACGTCCCTGCT
GGCCTTTACCGGATCCGGAAAGGGGTGTCTGCCTCAGCTGTGCCCTTCACTCCCTCCTCCCCGCTGCTGT
CCTGCTCCCAGGAGGGAAGCCGCCACACGAGCAAGCTTTCCCGCCACGGCAGTGGAGCCGACAGTGACTA
TGAGAACACGCAAAGTGGGGACCCACTGCTGGGGCTGGAAGGGAAGAGGTTTCTAGAGCTGGGCAAAGAG
GAAGACTTCCACCCAGAGCTGGAAAGCCTGGATGGAGACCTAGATCCTGGGCTTCCCAGCACAGAGGATG
TCATCTTGAAGACAGAGCAGGTCACCAAGAACATTCAGGAACTGTTGCGGGCAGCCCAGGAGTTCAAGCA
TGACAGCTTCGTGCCCTGCTCAGAGAAGATCCATTTGGCTGTGACCGAGATGGCCTCCCTCTTCCCAAAG
AGGCCAGCCCTGGAGCCAGTGCGGAGCTCACTGCGGCTGCTCAACGCCAGCGCCTACCGGCTGCAGAGTG
AGTGCCGGAAGACAGTGCCCCCAGAGCCCGGCGCCCCAGTGGACTTCCAGCTGCTGACTCAGCAGGTGAT
CCAGTGCGCCTATGACATCGCCAAGGCTGCCAAGCAGCTGGTCACCATCACCACCCGAGAGAAGAAGCAG
TGA

Translation (770 aa):
MSRKGPRAEVCADCSAPDPGWASISRGVLVCDECCSVHRSLGRHISIVKHLRHSAWPPTLLQMVHTLASN
GANSIWEHSLLDPAQVQSGRRKANPQDKVHPIKSEFIRAKYQMLAFVHKLPCRDDDGVTAKDLSKQLHSS
VRTGNLETCLRLLSLGAQANFFHPEKGTTPLHVAAKAGQTLQAELLVVYGADPGSPDVNGRTPIDYARQA
GHHELAERLVECQYELTDRLAFYLCGRKPDHKNGHYIIPQMADRSRQKCMSQSLDLSELAKAAKKKLQAL
SNRLFEELAMDVYDEVDRRENDAVWLATQNHSTLVTERSAVPFLPVNPEYSATRNQGRQKLARFNAREFA
TLIIDILSEAKRRQQGKSLSSPTDNLELSLRSQSDLDDQHDYDSVASDEDTDQEPLRSTGATRSNRARSM
DSSDLSDGAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRRLQREIHKLQAENLQLRQPPGPVPTP
PLPSERAEHTPMAPGGSTHRRDRQAFSMYEPGSALKPFGGPPGDELTTRLQPFHSTELEDDAIYSVHVPA
GLYRIRKGVSASAVPFTPSSPLLSCSQEGSRHTSKLSRHGSGADSDYENTQSGDPLLGLEGKRFLELGKE
EDFHPELESLDGDLDPGLPSTEDVILKTEQVTKNIQELLRAAQEFKHDSFVPCSEKIHLAVTEMASLFPK
RPALEPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITTREKKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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