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Report for CCDS4191.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4191.1 Public Homo sapiens 5 SPOCK1 24 110 108 CCDS HistoryNCBI Gene:6695Re-query CCDS DB by CCDS ID:4191.1Re-query CCDS DB by GeneID:6695See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4191.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394945.6 ENSP00000378401.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394945.6Link to Ensembl Protein Viewer:ENSP00000378401.1Re-query CCDS DB by Nucleotide ID:ENST00000394945Re-query CCDS DB by Protein ID:ENSP00000378401
Original member Current member NCBI NM_004598.4 NP_004589.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004598.4Link to Protein Sequence:NP_004589.1Re-query CCDS DB by Nucleotide ID:NM_004598Re-query CCDS DB by Protein ID:NP_004589Link to BLAST:NP_004589.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004589.1 439 Q08629 439 100% 0 0

Chromosomal Locations for CCDS 4191.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136978654 136978844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136979332 136979469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136985140 136985202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136988422 136988643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136992484 136992600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137067715 137067829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137112435 137112561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137140580 137140694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137267010 137267055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 137498373 137498558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGCCGGCGATCGCGGTGTTGGCGGCGGCCGCCGCGGCGTGGTGCTTCCTCCAAGTCGAGAGCCGGCACC
TGGACGCGCTCGCCGGAGGCGCGGGCCCCAACCACGGCAATTTCCTAGACAATGACCAGTGGCTGAGCAC
CGTCTCCCAGTACGACCGGGACAAGTACTGGAACCGCTTTCGAGACGATGATTATTTCAGAAACTGGAAT
CCCAACAAGCCCTTTGACCAAGCCCTGGACCCATCCAAGGACCCCTGCCTGAAGGTAAAATGCAGCCCTC
ACAAAGTGTGTGTGACCCAGGACTACCAGACCGCCCTGTGTGTCAGCCGCAAGCACCTGCTCCCCAGGCA
AAAGAAGGGGAACGTGGCCCAGAAACACTGGGTTGGACCTTCGAATTTGGTCAAGTGCAAGCCCTGTCCC
GTGGCACAGTCAGCCATGGTCTGCGGCTCAGATGGCCACTCCTACACATCCAAGTGCAAATTGGAGTTCC
ATGCTTGTTCTACTGGCAAAAGCCTCGCCACCCTCTGTGATGGGCCCTGTCCCTGTCTCCCAGAGCCTGA
GCCACCAAAGCACAAGGCAGAAAGGAGTGCCTGCACAGACAAGGAGTTGCGGAACCTTGCCTCCCGGCTG
AAGGATTGGTTTGGAGCTCTCCACGAGGATGCGAACAGAGTCATCAAGCCCACCAGCTCCAACACAGCCC
AAGGCAGGTTTGACACTAGCATCCTGCCCATCTGCAAGGACTCCCTGGGCTGGATGTTCAACAAGTTGGA
CATGAACTATGACCTCCTGCTTGACCCTTCAGAGATCAATGCCATCTACCTGGATAAGTACGAGCCCTGT
ATCAAGCCTCTTTTCAACTCGTGTGACTCCTTCAAGGATGGCAAGCTTTCTAACAATGAGTGGTGCTACT
GCTTCCAGAAGCCTGGAGGTCTCCCTTGCCAGAATGAAATGAACAGAATTCAGAAGCTGAGTAAGGGGAA
AAGCCTGTTGGGGGCCTTCATACCTCGGTGTAATGAGGAGGGCTATTACAAAGCCACACAGTGCCACGGC
AGCACGGGGCAGTGCTGGTGTGTGGACAAATATGGGAATGAGTTGGCTGGCTCCAGGAAACAGGGTGCTG
TGAGCTGTGAAGAGGAGCAGGAAACCTCAGGGGATTTTGGCAGTGGTGGGTCCGTGGTCCTGCTGGATGA
CCTAGAATATGAACGGGAGCTGGGACCAAAGGACAAAGAGGGGAAGCTGAGGGTGCACACCCGAGCCGTG
ACAGAGGATGATGAGGATGAGGATGATGACAAAGAGGATGAGGTCGGGTACATATGGTAG

Translation (439 aa):
MPAIAVLAAAAAAWCFLQVESRHLDALAGGAGPNHGNFLDNDQWLSTVSQYDRDKYWNRFRDDDYFRNWN
PNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAQKHWVGPSNLVKCKPCP
VAQSAMVCGSDGHSYTSKCKLEFHACSTGKSLATLCDGPCPCLPEPEPPKHKAERSACTDKELRNLASRL
KDWFGALHEDANRVIKPTSSNTAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDPSEINAIYLDKYEPC
IKPLFNSCDSFKDGKLSNNEWCYCFQKPGGLPCQNEMNRIQKLSKGKSLLGAFIPRCNEEGYYKATQCHG
STGQCWCVDKYGNELAGSRKQGAVSCEEEQETSGDFGSGGSVVLLDDLEYERELGPKDKEGKLRVHTRAV
TEDDEDEDDDKEDEVGYIW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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