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Report for CCDS41617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41617.1 Public Homo sapiens 11 AMPD3 24 110 108 CCDS HistoryNCBI Gene:272Re-query CCDS DB by CCDS ID:41617.1Re-query CCDS DB by GeneID:272See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41617.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396553.7 ENSP00000379801.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396553.7Link to Ensembl Protein Viewer:ENSP00000379801.2Re-query CCDS DB by Nucleotide ID:ENST00000396553Re-query CCDS DB by Protein ID:ENSP00000379801
Original member Current member EBI ENST00000529507.5 ENSP00000431648.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529507.5Link to Ensembl Protein Viewer:ENSP00000431648.1Re-query CCDS DB by Nucleotide ID:ENST00000529507Re-query CCDS DB by Protein ID:ENSP00000431648
Original member Current member NCBI NM_001025389.2 NP_001020560.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001025389.2Link to Protein Sequence:NP_001020560.1Re-query CCDS DB by Nucleotide ID:NM_001025389Re-query CCDS DB by Protein ID:NP_001020560Link to BLAST:NP_001020560.1
Original member Current member NCBI NM_001172430.1 NP_001165901.1 Accepted alive Link to Nucleotide Sequence:NM_001172430.1Link to Protein Sequence:NP_001165901.1Re-query CCDS DB by Nucleotide ID:NM_001172430Re-query CCDS DB by Protein ID:NP_001165901Link to BLAST:NP_001165901.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020560.1 767 Q01432-1 767 100% 0 0
NP_001165901.1 767 Q01432-1 767 100% 0 0

Chromosomal Locations for CCDS 41617.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 10461520 10461740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10478526 10478730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10482063 10482225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10484820 10485039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10487235 10487364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10493349 10493543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10494899 10495030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10495570 10495733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10496812 10496938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10500086 10500249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10501470 10501590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10502721 10502894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10504549 10504659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 10505708 10505884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2304 nt):
ATGCCGCGGCAGTTTCCCAAGCTGAACATCTCTGAAGTGGATGAGCAAGTCCGGCTCCTGGCGGAGAAGG
TGTTTGCTAAAGTGCTCCGAGAAGAGGACAGCAAAGATGCCCTGTCCCTGTTCACTGTCCCAGAGGACTG
CCCCATCGGGCAAAAGGAAGCCAAGGAGAGGGAGCTGCAGAAGGAGCTGGCAGAGCAGAAGTCTGTGGAG
ACCGCAAAAAGAAAGAAAAGTTTCAAGATGATTCGGTCCCAGTCCCTGTCTCTGCAAATGCCGCCACAGC
AAGATTGGAAGGGCCCCCCGGCAGCCAGTCCGGCCATGTCTCCCACAACCCCTGTGGTCACTGGAGCCAC
TTCCCTGCCCACGCCAGCACCCTATGCCATGCCTGAGTTCCAGCGGGTCACCATCAGCGGAGATTACTGT
GCCGGGATCACTTTGGAGGACTATGAGCAGGCAGCCAAGAGTCTGGCCAAGGCCCTAATGATCCGGGAGA
AGTATGCGCGGCTCGCCTACCACCGCTTCCCGCGGATCACATCCCAGTACCTGGGTCATCCGCGGGCGGA
TACTGCACCTCCGGAAGAGGGCCTTCCAGACTTCCACCCTCCTCCACTGCCCCAGGAAGACCCCTACTGC
CTGGATGATGCACCCCCCAACCTGGATTACTTGGTCCACATGCAGGGGGGCATCCTCTTTGTGTATGATA
ACAAGAAGATGCTGGAGCACCAGGAGCCGCACAGCCTACCCTACCCCGACCTGGAGACCTACACGGTGGA
CATGAGCCACATCCTGGCTCTCATCACCGATGGCCCCACGAAAACCTATTGTCACCGGCGACTGAACTTT
CTGGAATCCAAGTTCAGCCTTCATGAGATGTTAAACGAAATGTCCGAGTTCAAAGAGTTGAAGAGTAACC
CCCACCGGGACTTCTATAACGTGAGAAAGGTGGACACACACATCCATGCGGCCGCCTGCATGAACCAAAA
GCATCTGCTGCGCTTCATCAAGCACACATACCAGACGGAGCCTGACAGGACTGTGGCAGAGAAGCGGGGC
CGGAAGATCACCCTGCGGCAGGTGTTTGACGGCCTGCACATGGACCCCTACGACCTCACTGTGGACTCAC
TGGATGTCCACGCGGGCCGGCAGACATTCCACCGCTTTGACAAGTTCAACTCCAAATACAACCCTGTGGG
GGCCAGTGAGCTGCGTGACCTGTATTTGAAAACTGAAAACTATCTGGGAGGAGAGTACTTTGCTCGGATG
GTCAAGGAGGTTGCCCGGGAGCTGGAGGAGAGCAAGTACCAGTACTCAGAGCCACGGCTCTCCATCTACG
GCCGCAGTCCTGAGGAGTGGCCCAACCTGGCCTACTGGTTCATCCAGCACAAGGTCTACTCTCCCAACAT
GCGCTGGATCATCCAGGTGCCCCGGATTTATGACATATTTAGGTCAAAGAAGCTGCTGCCAAACTTTGGG
AAGATGCTGGAGAACATCTTCCTGCCCCTTTTCAAGGCCACTATCAACCCCCAAGATCATCGAGAGCTTC
ACCTCTTCCTTAAATATGTGACGGGGTTTGACAGCGTGGATGATGAGTCCAAGCACAGCGACCACATGTT
TTCCGACAAGAGCCCAAACCCGGACGTCTGGACCAGTGAGCAGAACCCACCCTACAGCTACTACCTGTAC
TACATGTATGCCAACATCATGGTGCTCAACAACCTCCGCAGGGAGCGCGGCCTGAGCACGTTCCTGTTCC
GGCCGCACTGTGGGGAAGCCGGCTCCATCACCCACCTGGTGTCTGCCTTCCTCACTGCTGACAACATTTC
CCACGGGCTGCTCCTCAAGAAGAGTCCGGTATTGCAGTATCTCTACTACCTTGCTCAGATCCCCATTGCC
ATGTCTCCTCTTAGCAACAACAGTTTGTTCCTCGAATATTCCAAGAACCCTCTGAGGGAATTCCTACACA
AGGGACTGCATGTTTCTCTTTCCACCGATGACCCCATGCAGTTCCACTACACGAAGGAAGCACTTATGGA
AGAATATGCCATTGCAGCTCAAGTGTGGAAGCTGAGCACCTGCGACCTGTGTGAGATCGCCAGGAACAGC
GTGCTGCAGAGCGGCCTCTCGCATCAGGAAAAGCAAAAGTTTCTGGGACAAAATTATTATAAAGAAGGAC
CTGAAGGAAATGATATTCGAAAGACAAATGTGGCTCAGATCCGGATGGCATTCCGATATGAGACCTTATG
CAATGAGCTCAGCTTCCTGTCTGATGCTATGAAATCAGAAGAGATCACCGCCTTGACCAACTAG

Translation (767 aa):
MPRQFPKLNISEVDEQVRLLAEKVFAKVLREEDSKDALSLFTVPEDCPIGQKEAKERELQKELAEQKSVE
TAKRKKSFKMIRSQSLSLQMPPQQDWKGPPAASPAMSPTTPVVTGATSLPTPAPYAMPEFQRVTISGDYC
AGITLEDYEQAAKSLAKALMIREKYARLAYHRFPRITSQYLGHPRADTAPPEEGLPDFHPPPLPQEDPYC
LDDAPPNLDYLVHMQGGILFVYDNKKMLEHQEPHSLPYPDLETYTVDMSHILALITDGPTKTYCHRRLNF
LESKFSLHEMLNEMSEFKELKSNPHRDFYNVRKVDTHIHAAACMNQKHLLRFIKHTYQTEPDRTVAEKRG
RKITLRQVFDGLHMDPYDLTVDSLDVHAGRQTFHRFDKFNSKYNPVGASELRDLYLKTENYLGGEYFARM
VKEVARELEESKYQYSEPRLSIYGRSPEEWPNLAYWFIQHKVYSPNMRWIIQVPRIYDIFRSKKLLPNFG
KMLENIFLPLFKATINPQDHRELHLFLKYVTGFDSVDDESKHSDHMFSDKSPNPDVWTSEQNPPYSYYLY
YMYANIMVLNNLRRERGLSTFLFRPHCGEAGSITHLVSAFLTADNISHGLLLKKSPVLQYLYYLAQIPIA
MSPLSNNSLFLEYSKNPLREFLHKGLHVSLSTDDPMQFHYTKEALMEEYAIAAQVWKLSTCDLCEIARNS
VLQSGLSHQEKQKFLGQNYYKEGPEGNDIRKTNVAQIRMAFRYETLCNELSFLSDAMKSEEITALTN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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