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Report for CCDS4154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4154.1 Public Homo sapiens 5 SLC22A5 24 110 108 CCDS HistoryNCBI Gene:6584Re-query CCDS DB by CCDS ID:4154.1Re-query CCDS DB by GeneID:6584See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4154.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000245407.8 ENSP00000245407.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000245407.8Link to Ensembl Protein Viewer:ENSP00000245407.3Re-query CCDS DB by Nucleotide ID:ENST00000245407Re-query CCDS DB by Protein ID:ENSP00000245407
Original member Current member NCBI NM_003060.4 NP_003051.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003060.4Link to Protein Sequence:NP_003051.1Re-query CCDS DB by Nucleotide ID:NM_003060Re-query CCDS DB by Protein ID:NP_003051Link to BLAST:NP_003051.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003051.1 557 O76082-1 557 100% 0 0

Chromosomal Locations for CCDS 4154.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 132369973 132370365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132378378 132378481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132384147 132384301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132385328 132385499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132387025 132387151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132388921 132389021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132390690 132390904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132392433 132392615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132393676 132393811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132394185 132394272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGCGGGACTACGACGAGGTGACCGCCTTCCTGGGCGAGTGGGGGCCCTTCCAGCGCCTCATCTTCTTCC
TG
CTCAGCGCCAGCATCATCCCCAATGGCTTCACCGGCCTGTCCTCCGTGTTCCTGATAGCGACCCCGGA
G
CACCGCTGCCGGGTGCCGGACGCCGCGAACCTGAGCAGCGCCTGGCGCAACCACACTGTCCCACTGCGG
CTG
CGGGACGGCCGCGAGGTGCCCCACAGCTGCCGCCGCTACCGGCTCGCCACCATCGCCAACTTCTCGG
CG
CTTGGGCTGGAGCCGGGGCGCGACGTGGACCTGGGGCAGCTGGAGCAGGAGAGCTGTCTGGATGGCTG
G
GAGTTCAGTCAGGACGTCTACCTGTCCACCATTGTGACCGAGTGGAACCTGGTGTGTGAGGACGACTGG
AAG
GCCCCACTCACAATCTCCTTGTTCTTCGTGGGTGTGCTGTTGGGCTCCTTCATTTCAGGGCAGCTGT
CA
GACAGGTTTGGCCGGAAGAATGTGCTGTTCGTGACCATGGGCATGCAGACAGGCTTCAGCTTCCTGCA
G
ATCTTCTCGAAGAATTTTGAGATGTTTGTCGTGCTGTTTGTCCTTGTAGGCATGGGCCAGATCTCCAAC
TAT
GTGGCAGCATTTGTCCTGGGGACAGAAATTCTTGGCAAGTCAGTTCGTATAATATTCTCTACGTTAG
GA
GTGTGCATATTTTATGCATTTGGCTACATGGTGCTGCCACTGTTTGCTTACTTCATCCGAGACTGGCG
G
ATGCTGCTGGTGGCGCTGACGATGCCGGGGGTGCTATGCGTGGCACTCTGGTGGTTCATCCCTGAGTCC
CCC
CGATGGCTCATCTCTCAGGGACGATTTGAAGAGGCAGAGGTGATCATCCGCAAGGCTGCCAAAGCCA
AT
GGGATTGTTGTGCCTTCCACTATCTTTGACCCGAGTGAGTTACAAGACCTAAGTTCCAAGAAGCAGCA
G
TCCCACAACATTCTGGATCTGCTTCGAACCTGGAATATCCGGATGGTCACCATCATGTCCATAATGCTG
TG
G
ATGACCATATCAGTGGGCTATTTTGGGCTTTCGCTTGATACTCCTAACTTGCATGGGGACATCTTTG
TG
AACTGCTTCCTTTCAGCGATGGTTGAAGTCCCAGCATATGTGTTGGCCTGGCTGCTGCTGCAATATTT
G
CCCCGGCGCTATTCCATGGCCACTGCCCTCTTCCTGGGTGGCAGTGTCCTTCTCTTCATGCAGCTGGTA
CCC
CCAGACTTGTATTATTTGGCTACAGTCCTGGTGATGGTGGGCAAGTTTGGAGTCACGGCTGCCTTTT
CC
ATGGTCTACGTGTACACAGCCGAGCTGTATCCCACAGTGGTGAGAAACATGGGTGTGGGAGTCAGCTC
C
ACAGCATCCCGCCTGGGCAGCATCCTGTCTCCCTACTTCGTTTACCTTGGTGCCTACGACCGCTTCCTG
CCC
TACATTCTCATGGGAAGTCTGACCATCCTGACAGCCATCCTCACCTTGTTTCTCCCAGAGAGCTTCG
GT
ACCCCACTCCCAGACACCATTGACCAGATGCTAAGAGTCAAAGGAATGAAACACAGAAAAACTCCAAG
T
CACACAAGGATGTTAAAAGATGGTCAAGAAAGGCCCACAATCCTTAAAAGCACAGCCTTCTAA


Translation (557 aa):
MRDYDEVTAFLGEWGPFQRLIFFLLSASIIPNGFTGLSSVFLIATPEHRCRVPDAANLSSAWRNHTVPLR
L
RDGREVPHSCRRYRLATIANFSALGLEPGRDVDLGQLEQESCLDGWEFSQDVYLSTIVTE
WNLVCEDDW
K
APLTISLFFVGVLLGSFISGQLSD
RFGRKNVLFVTMGMQTGFSFLQIFSKNFEMFVVLFVLVGMGQISN
Y
VAAFVL
GTEILGKSVRIIFSTLGVCIFYAFGYMVLPLFAYFIRDWRMLLVALTMPGVLCVALWWFIPES
P
RWLISQGRFEEAEVIIRKAAKANGIVVPSTIFDPSE
LQDLSSKKQQSHNILDLLRTWNIRMVTIMSIML
W
MTISVGYFGLSLDTPNLHGDIFVNCFLSAMVEVPAYVLAWLLLQYLPRRYSMATALFLGGSVLLFMQLV
P
P
DLYYLATVLVMVGKFGVTAAFSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAYDRFL
P
YILMGSLTILTAILTLFLPESFGTPLPDTIDQMLRVK
GMKHRKTPSHTRMLKDGQERPTILKSTAF



Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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