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Report for CCDS41293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41293.1 Public Homo sapiens 1 PHACTR4 24 110 108 CCDS HistoryNCBI Gene:65979Re-query CCDS DB by CCDS ID:41293.1Re-query CCDS DB by GeneID:65979See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41293.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373839.8 ENSP00000362945.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373839.8Link to Ensembl Protein Viewer:ENSP00000362945.3Re-query CCDS DB by Nucleotide ID:ENST00000373839Re-query CCDS DB by Protein ID:ENSP00000362945
Original member Current member NCBI NM_001048183.3 NP_001041648.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001048183.3Link to Protein Sequence:NP_001041648.1Re-query CCDS DB by Nucleotide ID:NM_001048183Re-query CCDS DB by Protein ID:NP_001041648Link to BLAST:NP_001041648.1
Original member Current member NCBI NM_001350160.2 NP_001337089.1 Accepted alive Link to Nucleotide Sequence:NM_001350160.2Link to Protein Sequence:NP_001337089.1Re-query CCDS DB by Nucleotide ID:NM_001350160Re-query CCDS DB by Protein ID:NP_001337089Link to BLAST:NP_001337089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041648.1 702 Q8IZ21-1 702 100% 0 0
NP_001337089.1 702 Q8IZ21-1 702 100% 0 0

Chromosomal Locations for CCDS 41293.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 28407448 28407463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28459085 28459258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28460212 28460292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28465685 28465849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28466382 28466768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28473554 28474151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28476107 28476291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28480451 28480604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28489170 28489225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28490951 28491012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28491650 28491787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28493015 28493091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28496534 28496549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2109 nt):
ATGGAAGATCCATTTGAGGAAGCAGACCAGCCCACTACAGAGCCAGGCATGGTCCTGGACAGTGTGGAAG
CAGGAGACACAACACCTCCTACCAAAAGGAAGAGCAAGTTCTCAGGCTTTGGCAAGATCTTCAAGCCCTG
GAAATGGAGGAAAAAAAAAAGTAGTGATAAATTTAAAGAGACTTCAGAAGTTTTAGAACGGAAAATATCT
ATGCGAAAGCCAAGAGAAGAGCTGGTTAAAAGAGGGGTTCTGTTGGAAGACCCTGAGCAAGGTGGTGAGG
ATCCAGGAAAGCCAAGCGATGCCATGTTAAAGAATGGCCATACCACCCCCATAGGGAATGCCAGATCATC
TAGTCCAGTCCAAGTAGAGGAAGAGCCAGTAAGATTAGCAAGTCTTAGGAAAGCTATTCCAGAAGAGGAC
CTAAAGAAACGACTAGGCTCAACTGGAAGCCAGCCTAATTCTGAAGCAGAGTCTGTTCCTGAGAATGTAC
CCAAACCACCTTTACTTCCTCCCAAAAGACCCTTGTCCTCTTCTCATGAAGCAAGTGAAGGGCAAGCAAA
GGATGCCACTTCCTCTGGCGGCACGGCAAGGTTCATCATCTCCACCTCCATCACCACAGCACCCGCTGCC
ACCACTGCTGCCACAAGCCTTGCAAAGACTGTTAATCTCTCTGTCACCCCTTCCCCAGCACCCAGGACTC
TGCCTGCTGCTCCTGCCAGCACTAACACTACTGCTACCCCAAGCCTCACTCATATGGTCCCTGCCAAGCA
GCCCCCTATCCCTCCCCCTAAACCAGCTCACAGAAATAGCAACCCTGTCATTGCTGAACTGTCCCAAGCA
ATAAACAGTGGTACATTGTTATCAAAACCGTCCCCACCCTTACCACCTAAGAGAGGCATTCCATCAACCT
CAGTACCCACCTTGGAGTCTGCTGCTGCCATCACCACAAAAACACCAAGTGATGAAAGAGAGAAGAGCAC
GTGTTCTATGGGCTCGGAACTACTACCAATGATCTCACCTCGCTCTCCGTCCCCCCCACTGCCTACTCAT
ATACCTCCAGAGCCTCCACGCACCCCTCCATTCCCTGCTAAGACTTTTCAAGTTGTGCCAGAAATTGAGT
TTCCACCATCCTTAGATCTACACCAGGAGATTCCCCAGCAGGAAGATCAGAAAAAGGAAGTCCCCAAGAG
GATACTGGACCAGAACTTTGGGGAGCCCCATATACCCTCTAGGCTGCCTCCACTCCCACTGCATATTCGA
ATCCAGCAGGCCCTCACCAGCCCACTTCCCATGACTCCTATTCTGGAGGGTTCTCACAGAGCTCATTCGT
TGCTTTTTGAAAACAGTGACAGCTTTTCTGAGGACAGCAGTACGCTGGGTCGGACCAGGTCTCTTCCCAT
CACTATTGAAATGCTAAAAGTTCCAGACGATGAAGAAGAAGAGGAGCAAACCTGTCCATCCACATTCAGT
GAAGAAATGACACCTACCTCAGTCATTCCTAAATTACCACAGTGTCTACGGGAGGAAGAAGAGAAGGAGA
GCGACTCTGATTCAGAAGGTCCCATTCAGTACCGAGATGAAGAAGATGAAGATGAAAGCTATCAGAGTGC
TCTCGCCAACAAAGTGAAGAGGAAAGACACACTGGCAATGAAGTTGAACCACAGACCCAGTGAACCAGAG
TTGAACCTGAATTCTTGGCCTTGTAAAAGCAAGGAGGAGTGGAATGAAATACGGCACCAGATTGGAAACA
CACTGATCCGGCGACTGAGTCAAAGACCAACACCAGAAGAACTAGAACAACGCAATATATTGCAACCTAA
AAATGAAGCTGATCGTCAGGCAGAAAAACGAGAAATTAAACGTCGGCTCACTAGAAAGCTCAGTCAAAGG
CCAACTGTCGCTGAACTCCTTGCCAGGAAGATTCTGAGGTTTAATGAATATGTAGAGGTAACAGATGCTC
AAGATTATGACCGGCGAGCCGACAAACCTTGGACCAAACTGACCCCTGCTGACAAGGCTGCCATAAGAAA
AGAATTAAATGAATTTAAAAGCTCCGAGATGGAGGTTCATGAAGAGAGCAAACATTTTACACGCTACCAT
CGTCCATGA

Translation (702 aa):
MEDPFEEADQPTTEPGMVLDSVEAGDTTPPTKRKSKFSGFGKIFKPWKWRKKKSSDKFKETSEVLERKIS
MRKPREELVKRGVLLEDPEQGGEDPGKPSDAMLKNGHTTPIGNARSSSPVQVEEEPVRLASLRKAIPEED
LKKRLGSTGSQPNSEAESVPENVPKPPLLPPKRPLSSSHEASEGQAKDATSSGGTARFIISTSITTAPAA
TTAATSLAKTVNLSVTPSPAPRTLPAAPASTNTTATPSLTHMVPAKQPPIPPPKPAHRNSNPVIAELSQA
INSGTLLSKPSPPLPPKRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTH
IPPEPPRTPPFPAKTFQVVPEIEFPPSLDLHQEIPQQEDQKKEVPKRILDQNFGEPHIPSRLPPLPLHIR
IQQALTSPLPMTPILEGSHRAHSLLFENSDSFSEDSSTLGRTRSLPITIEMLKVPDDEEEEEQTCPSTFS
EEMTPTSVIPKLPQCLREEEEKESDSDSEGPIQYRDEEDEDESYQSALANKVKRKDTLAMKLNHRPSEPE
LNLNSWPCKSKEEWNEIRHQIGNTLIRRLSQRPTPEELEQRNILQPKNEADRQAEKREIKRRLTRKLSQR
PTVAELLARKILRFNEYVEVTDAQDYDRRADKPWTKLTPADKAAIRKELNEFKSSEMEVHEESKHFTRYH
RP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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