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Report for CCDS4059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4059.1 Public Homo sapiens 5 XRCC4 24 110 108 CCDS HistoryNCBI Gene:7518Re-query CCDS DB by CCDS ID:4059.1Re-query CCDS DB by GeneID:7518See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4059.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338635.10 ENSP00000342011.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338635.10Link to Ensembl Protein Viewer:ENSP00000342011.6Re-query CCDS DB by Nucleotide ID:ENST00000338635Re-query CCDS DB by Protein ID:ENSP00000342011
Original member Current member EBI ENST00000511817.1 ENSP00000421491.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511817.1Link to Ensembl Protein Viewer:ENSP00000421491.1Re-query CCDS DB by Nucleotide ID:ENST00000511817Re-query CCDS DB by Protein ID:ENSP00000421491
Original member Current member NCBI NM_001318012.3 NP_001304941.1 Accepted alive Link to Nucleotide Sequence:NM_001318012.3Link to Protein Sequence:NP_001304941.1Re-query CCDS DB by Nucleotide ID:NM_001318012Re-query CCDS DB by Protein ID:NP_001304941Link to BLAST:NP_001304941.1
Original member Current member NCBI NM_022406.5 NP_071801.1 Accepted alive Link to Nucleotide Sequence:NM_022406.5Link to Protein Sequence:NP_071801.1Re-query CCDS DB by Nucleotide ID:NM_022406Re-query CCDS DB by Protein ID:NP_071801Link to BLAST:NP_071801.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304941.1 336 Q13426-1 336 100% 0 0
NP_071801.1 336 Q13426-1 336 100% 0 0

Chromosomal Locations for CCDS 4059.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 83104920 83105058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83111028 83111203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83195770 83195936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83203552 83203707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83204815 83204921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83258530 83258677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 83353125 83353242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGGAGAGAAAAATAAGCAGAATCCACCTTGTTTCTGAACCCAGTATAACTCATTTTCTACAAGTATCTT
GG
GAGAAAACACTGGAATCTGGTTTTGTTATTACACTTACTGATGGTCATTCAGCATGGACTGGGACAGT
T
TCTGAATCAGAGATTTCCCAAGAAGCTGATGACATGGCAATGGAAAAAGGGAAATATGTTGGTGAACTG
AGA
AAAGCATTGTTGTCAGGAGCAGGACCAGCTGATGTATACACGTTTAATTTTTCTAAAGAGTCTTGTT
AT
TTCTTCTTTGAGAAAAACCTGAAAGATGTCTCATTCAGACTTGGTTCCTTCAACCTAGAGAAAGTTGA
A
AACCCAGCTGAAGTCATTAGAGAACTTATTTGTTATTGCTTGGACACCATTGCAGAAAATCAAGCCAAA
AAT
GAGCACCTGCAGAAAGAAAATGAAAGGCTTCTGAGAGATTGGAATGATGTTCAAGGACGATTTGAAA
AA
TGTGTGAGTGCTAAGGAAGCTTTGGAGACTGATCTTTATAAGCGGTTTATTCTGGTGTTGAATGAGAA
G
AAAACAAAAATCAGAAGTTTGCATAATAAATTATTAAATGCAGCTCAAGAACGAGAAAAGGACATCAAA
CAA
GAAGGGGAAACTGCAATCTGTTCTGAAATGACTGCTGACCGAGATCCAGTCTATGATGAGAGTACTG
AT
GAGGAAAGTGAAAACCAAACTGATCTCTCTGGGTTGGCTTCAGCTGCTGTAAGTAAAGATGATTCCAT
T
ATTTCAAGTCTTGATGTCACTGATATTGCACCAAGTAGAAAAAGGAGACAGCGAATGCAAAGAAATCTT
GGG
ACAGAACCTAAAATGGCTCCTCAGGAGAATCAGCTTCAAGAAAAGGAAAATTCTAGGCCTGATTCTT
CA
CTACCTGAGACGTCTAAAAAGGAGCACATCTCAGCTGAAAACATGTCTTTAGAAACTCTGAGAAACAG
C
AGCCCAGAAGACCTCTTTGATGAGATTTAA


Translation (336 aa):
MERKISRIHLVSEPSITHFLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGEL
R
KALLSGAGPADVYTFNFSKESCYFFFEKNLKDVS
FRLGSFNLEKVENPAEVIRELICYCLDTIAENQAK
N
EHLQKENERLLRDWNDVQG
RFEKCVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDIK
Q
E
GETAICSEMTADRDPVYDESTDEESENQTDLSGLASAAVSKDDSIISSLDVTDIAPSRKRRQRMQRNL
G
TEPKMAPQENQLQEKE
NSRPDSSLPETSKKEHISAENMSLETLRNSSPEDLFDEI



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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