NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Thursday, April 25, 2024, starting at 7:00 a.m. EDT for up to 120 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40581.1 Public Mus musculus 9 Fez1 23 108 98 CCDS HistoryNCBI Gene:235180Re-query CCDS DB by CCDS ID:40581.1Re-query CCDS DB by GeneID:235180See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034630.14 ENSMUSP00000034630.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034630.14Link to Ensembl Protein Viewer:ENSMUSP00000034630.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034630Re-query CCDS DB by Protein ID:ENSMUSP00000034630
Original member Current member EBI ENSMUST00000163816.7 ENSMUSP00000126072.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163816.7Link to Ensembl Protein Viewer:ENSMUSP00000126072.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163816Re-query CCDS DB by Protein ID:ENSMUSP00000126072
Original member Current member NCBI NM_001357610.1 NP_001344539.1 Accepted alive Link to Nucleotide Sequence:NM_001357610.1Link to Protein Sequence:NP_001344539.1Re-query CCDS DB by Nucleotide ID:NM_001357610Re-query CCDS DB by Protein ID:NP_001344539Link to BLAST:NP_001344539.1
Original member Current member NCBI NM_001357611.1 NP_001344540.1 Accepted alive Link to Nucleotide Sequence:NM_001357611.1Link to Protein Sequence:NP_001344540.1Re-query CCDS DB by Nucleotide ID:NM_001357611Re-query CCDS DB by Protein ID:NP_001344540Link to BLAST:NP_001344540.1
Original member Current member NCBI NM_001357612.1 NP_001344541.1 Accepted alive Link to Nucleotide Sequence:NM_001357612.1Link to Protein Sequence:NP_001344541.1Re-query CCDS DB by Nucleotide ID:NM_001357612Re-query CCDS DB by Protein ID:NP_001344541Link to BLAST:NP_001344541.1
Original member NCBI NM_001357613.1 NP_001344542.1 Updated not alive Link to Nucleotide Sequence:NM_001357613.1Link to Protein Sequence:NP_001344542.1Re-query CCDS DB by Nucleotide ID:NM_001357613Re-query CCDS DB by Protein ID:NP_001344542
Current member NCBI NM_001357613.2 NP_001344542.1 Accepted alive Link to Nucleotide Sequence:NM_001357613.2Link to Protein Sequence:NP_001344542.1Re-query CCDS DB by Nucleotide ID:NM_001357613Re-query CCDS DB by Protein ID:NP_001344542Link to BLAST:NP_001344542.1
Original member Current member NCBI NM_001357614.1 NP_001344543.1 Accepted alive Link to Nucleotide Sequence:NM_001357614.1Link to Protein Sequence:NP_001344543.1Re-query CCDS DB by Nucleotide ID:NM_001357614Re-query CCDS DB by Protein ID:NP_001344543Link to BLAST:NP_001344543.1
Original member NCBI NM_183171.5 NP_898994.2 Updated not alive Link to Nucleotide Sequence:NM_183171.5Link to Protein Sequence:NP_898994.2Re-query CCDS DB by Nucleotide ID:NM_183171Re-query CCDS DB by Protein ID:NP_898994
Current member NCBI NM_183171.6 NP_898994.2 Accepted alive Link to Nucleotide Sequence:NM_183171.6Link to Protein Sequence:NP_898994.2Re-query CCDS DB by Nucleotide ID:NM_183171Re-query CCDS DB by Protein ID:NP_898994Link to BLAST:NP_898994.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344539.1 392 Q8K0X8 392 100% 0 0
NP_001344540.1 392 Q8K0X8 392 100% 0 0
NP_001344541.1 392 Q8K0X8 392 100% 0 0
NP_001344542.1 392 Q8K0X8 392 100% 0 0
NP_001344543.1 392 Q8K0X8 392 100% 0 0
NP_898994.2 392 Q8K0X8 392 100% 0 0

Chromosomal Locations for CCDS 40581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 36843707 36844017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36850347 36850446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36860812 36860898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36863497 36863665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36867696 36867967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36868848 36868928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36870481 36870556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36876297 36876362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 36878566 36878582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGGAGGCCCCACTGGTGAGTCTGGATGAAGAGTTTGAAGATATCAGGCCCAGTTGCACTGAGGAGCCAG
AGGAAAAGCCACAGTGTCTGTATGGCACATCTCCTCATCACCTGGAGGACCCTTCCCTCTCTGAGCTTGA
GAATTTTTCTTCCGAAATAATCAGCTTCAAGTCCATGGAGGACCTCGTGAATGAATTTGATGAGAAGCTC
AATGTCTGCTTTCGGAACTACAACGCCAAGACGGAGAGCCTGGCTCCAGTGAAGAACCAGCTGCAGATCC
AGGAGGAGGAGGAGACTCTTCGGGATGAGGAGGTTTGGGATGCTCTGACAGACAATTACATCCCTTCACT
CTCAGAAGACTGGAGGGACCCAAACATTGAAGCTCTGAATGGCAACAGCTCTGACATTGAGATTCATGAG
AAGGAAGAAGAAGAGTTCAATGAGAAGAGTGAAAATGACTCTGGCATCAATGAGGAGCCTCTCCTCACAG
CTGACCAGGTGATTGAGGAAATTGAAGAAATGATGCAGAACTCTCCAGATCCTGAAGAGGAAGAGGAGGT
GCTAGAAGAGGAGGATGGAGGAGAAATCTCATCCCAGGCAGATTCAGTCCTGCTACAAGAGATGCAGGCC
TTGACACAGACCTTCAACAACAACTGGTCCTATGAAGGGCTGAGACACATGTCTGGGTCTGAGCTGACAG
AGCTGCTGGACCGGGTAGAGGGTGCCATCCGTGACTTCTCAGAGGAGCTGGTCCACCAGCTGGCCCGCAG
AGATGAGCTGGAGTTTGAGAAGGAAGTGAAGAACTCCTTCATCACGGTGCTCATTGAGGTTCAGAACAAG
CAGAGGGAGCAGCGGGAACTGATGAAGAAGAGGCGGAAAGAGAAGGGGTTAAGCCTGCAGAGCAACCGGA
TAGAGAAGGGAAGTCAGATGCCTCTCAAGCGCTTCAGCATGGAAGGCATCTCCAACATCCTGCAGAGCGG
CATCCGCCAGACCTTTGGCTCCTCAGGAGCTGACAGACAGTATCTGAACACAGTCATCCCTTATGAGAAG
AAATCCTCTCCTCCCTCTGTGGAAGACCTGCAGATGCTGACAAACATTCTCTTCGCCATGAAGGAGGATA
ACGAGAAGGTGCCTACTTTGCTAACGGACTACATTTTAAAAGTGCTTTGTCCAACCTAA

Translation (392 aa):
MEAPLVSLDEEFEDIRPSCTEEPEEKPQCLYGTSPHHLEDPSLSELENFSSEIISFKSMEDLVNEFDEKL
NVCFRNYNAKTESLAPVKNQLQIQEEEETLRDEEVWDALTDNYIPSLSEDWRDPNIEALNGNSSDIEIHE
KEEEEFNEKSENDSGINEEPLLTADQVIEEIEEMMQNSPDPEEEEEVLEEEDGGEISSQADSVLLQEMQA
LTQTFNNNWSYEGLRHMSGSELTELLDRVEGAIRDFSEELVHQLARRDELEFEKEVKNSFITVLIEVQNK
QREQRELMKKRRKEKGLSLQSNRIEKGSQMPLKRFSMEGISNILQSGIRQTFGSSGADRQYLNTVIPYEK
KSSPPSVEDLQMLTNILFAMKEDNEKVPTLLTDYILKVLCPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH