NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40362.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40362.1 Public Mus musculus 8 Lpar2 23 108 98 CCDS HistoryNCBI Gene:53978Re-query CCDS DB by CCDS ID:40362.1Re-query CCDS DB by GeneID:53978See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40362.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034325.5 ENSMUSP00000034325.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034325.5Link to Ensembl Protein Viewer:ENSMUSP00000034325.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034325Re-query CCDS DB by Protein ID:ENSMUSP00000034325
Original member Current member EBI ENSMUST00000164890.7 ENSMUSP00000128261.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164890.7Link to Ensembl Protein Viewer:ENSMUSP00000128261.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164890Re-query CCDS DB by Protein ID:ENSMUSP00000128261
Original member Current member NCBI NM_020028.3 NP_064412.2 Accepted alive Link to Nucleotide Sequence:NM_020028.3Link to Protein Sequence:NP_064412.2Re-query CCDS DB by Nucleotide ID:NM_020028Re-query CCDS DB by Protein ID:NP_064412Link to BLAST:NP_064412.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064412.2 348 Q9JL06 348 100% 0 0

Chromosomal Locations for CCDS 40362.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 69823563 69824295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69826291 69826604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGGGCCAGTGCTACTACAACGAGACCATCGGCTTTTTCTATAATAACAGCGGCAAGGAGCTCAGCCTTC
ACTGGCGCCCCAAAGATGTGGTGGTGGTGGCCCTGGGGCTGACAGTCAGTGTGCTGGTATTGCTGACCAA
TCTGCTGGTTATTGCAGCCATCGCCTCCAACCGACGCTTCCACCAGCCCATATACTACCTGCTTGGCAAC
TTGGCTGCGGCTGACCTCTTCGCTGGCATGGCCTACCTCTTCCTCATGTTCCATACTGGCCCACGCACTG
CCAGGCTCTCCATCAAAGGCTGGTTCCTGCGACAGGGCCTGCTGGACACCAGCCTCACGGCGTCAGTGGC
CACACTGCTGGCCATCGCTGTGGAACGGCACCGCAGTGTGATGGCGGTACAGCTACACAGCCGCCTGCCC
CGGGGCCGTGTGGTCACACTCATCGTGGGTGTGTGGGCGGCTGCACTGGGTCTGGGGTTGCTACCTGCAC
ACTTCTGGCACTGCCTCTGTGACTTGGACAGTTGCTCACGCATGGTGCCCCTGTTCAGCCGCTCCTACTT
GGCTGCGTGGGCCCTATCCAGCCTGCTTGTCTTCCTACTCATGGTAGCTGTCTACACACGAATTTTCTTC
TATGTGCGTAGACGGGTGGAACGCATGGCGGAGCACGTCAGCTGCCATCCCCGCTACCGAGAGACCACAC
TCAGCCTAGTCAAGACGGTTGTCATCATTCTGGGGGCATTTGTGGTGTGCTGGACACCGGGCCAGGTGGT
GCTGCTCCTGGATGGCCTGGACTGTAAGTCCTGCAACGTTCTGGCTGTGGAGAAGTACTTCCTGCTCCTG
GCTGAGGCCAACTCACTGGTCAATGCAGTGGTATATTCCTGCCGAGATGCTGAGATGCGCCGCACCTTCC
GCCGCCTTCTCTGCTGCATGTGTCTCCGCTGGTCCAGCCACAAGTCTGCCCGTTACTCAGCTTCTGCCCA
GACGGGTGCCAGCACGCGGATCATGCTTCCTGAGAATGGCCGCCCACTGATGGACTCCACCCTTTAA

Translation (348 aa):
MGQCYYNETIGFFYNNSGKELSLHWRPKDVVVVALGLTVSVLVLLTNLLVIAAIASNRRFHQPIYYLLGN
LAAADLFAGMAYLFLMFHTGPRTARLSIKGWFLRQGLLDTSLTASVATLLAIAVERHRSVMAVQLHSRLP
RGRVVTLIVGVWAAALGLGLLPAHFWHCLCDLDSCSRMVPLFSRSYLAAWALSSLLVFLLMVAVYTRIFF
YVRRRVERMAEHVSCHPRYRETTLSLVKTVVIILGAFVVCWTPGQVVLLLDGLDCKSCNVLAVEKYFLLL
AEANSLVNAVVYSCRDAEMRRTFRRLLCCMCLRWSSHKSARYSASAQTGASTRIMLPENGRPLMDSTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH