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Report for CCDS39686.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39686.1 Public Mus musculus 6 Pde6h 23 108 98 CCDS HistoryNCBI Gene:78600Re-query CCDS DB by CCDS ID:39686.1Re-query CCDS DB by GeneID:78600See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39686.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000137768.1 ENSMUSP00000119246.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137768.1Link to Ensembl Protein Viewer:ENSMUSP00000119246.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137768Re-query CCDS DB by Protein ID:ENSMUSP00000119246
Original member Current member NCBI NM_023898.4 NP_076387.2 Accepted alive Link to Nucleotide Sequence:NM_023898.4Link to Protein Sequence:NP_076387.2Re-query CCDS DB by Nucleotide ID:NM_023898Re-query CCDS DB by Protein ID:NP_076387Link to BLAST:NP_076387.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076387.2 83 P61249 83 100% 0 0

Chromosomal Locations for CCDS 39686.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 136959261 136959394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136961165 136961205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136963193 136963269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (252 nt):
ATGAGTGACAGCCCTTCCCTGAGTCCTCCAGCACCAAGCCAGGGCCCTACTACCCCACGCAAAGGGCCCC
CCAAGTTCAAGCAGAGGCAGACTCGACAGTTCAAGAGCAAGCCTCCCAAGAAAGGGGTGAAAGGGTTTGG
AGATGACATCCCAGGCATGGAGGGGCTAGGAACAGATATCACGGTCATCTGTCCCTGGGAAGCGTTCAGC
CATCTGGAGCTGCATGAGCTTGCTCAGTTCGGGATCATATGA

Translation (83 aa):
MSDSPSLSPPAPSQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVKGFGDDIPGMEGLGTDITVICPWEAFS
HLELHELAQFGII


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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